PUBLICATION
Guo-Wei Wei
Editorials
(28)
Topological Deep Learning: An Emerging Paradigm in Data Science, SIAM News,
November 22, (2024).
(27) Tamar Schlick and Guo-Wei Wei, Machine Learning Tools Advance Biophysics, Biophysical Journal, Volume 123, Issue 17, Pages E1-E3 (2024).
(26) Guo-Wei Wei, Jie Wu, Duc Nguyen, and Kelin Xia, Preface Special Issue on Recent Advances in Topological Deep Learning, Foundation of Data Science, 6 (2), i-iii, (2024).
(25) KM Merz, Guo-Wei Wei, F Zhu, Cutting-Edge Methodologies in Omics Data Analysis, Journal of Chemical Information and Modeling 64 (13), 4939-4940, (2024).
(24) KM Merz, YS Choong, Z Cournia, O Isayev, TA Soares, Guo-Wei Wei, F Zhu, Machine Learning in Materials Science, Journal of Chemical Information and Modeling 64 (10), 3959-3960, (2024).
(23) KM Merz, Guo-Wei Wei, F Zhu, Machine Learning in Bio-cheminformatics, Journal of Chemical Information and Modeling 64 (7), 2125-2128, (2024).
(22) Mathematics-assisted Directed Evolution and Protein Engineering, SIAM News, June 6, (2023).
(21) Characterizing Musical Sounds with Topological Data Analysis, SIAM News, 56(2), Mach (2023).
(20) KJ Naidoo, KM Merz, Guo-Wei Wei, Modeling Reactions from Chemical Theories to Machine Learning, Journal of Chemical Information and Modeling 63 (23), 7273-7273, (2023).
(19) KM Merz, Guo-Wei Wei, F Zhu, Harnessing the Power of Large Language Model-Based Chatbots for Scientific Discovery, Journal of Chemical Information and Modeling 63 (17), 5395-5395, (2023).
(17) KM Merz, Guo-Wei Wei, F Zhu, Machine learning in bio-cheminformatics, Journal of Chemical Information and Modeling 63 (1), 1-1, (2023).
(16) Guo-Wei Wei, TA Soares, H Wahab, F Zhu, Computational Chemistry in Asia, Journal of Chemical Information and Modeling 62 (21), 5035-5037, (2022).
(15) Guo-Wei Wei, F Zhu, KM Merz, Editorial on Machine Learning, Journal of Chemical Information and Modeling, 62 (17), 3941-3941, (2022).
(14) Guo-Wei Wei, Topological Artificial Intelligence Forecasting of Future Dominant Viral Variants, SIAM News, August 9, (2022).
(13) Guo-Wei Wei, TA Soares, H Wahab, R Wang, Computational Chemistry in Asia, Journal of Chemical Information and Modeling 61 (2), 547-547, (2021).
(12) KM Merz Jr, G De Fabritiis, Guo-Wei Wei, Generative models for molecular design, Journal of Chemical Information and Modeling, 60 (12), 5635-5636, (2020).
(11) KM Merz Jr, G De Fabritiis, Guo-Wei Wei, JCIM special issue on generative models for molecular design, Journal of Chemical Information and Modeling 60 (3), 1072-1072, (2020).
(10) Guo-Wei Wei, Persistent Homology Analysis of Biomolecular Data, SIAM News, 50(10) December, (2017).
(9) Guo-Wei Wei, Mathematics at the eve of a historic transition in biology, Computational and Mathematical Biophysics, 5, 138-141, (2017).
(7) Mathematical Molecular Bioscience and Biophysics, SIAM News, 49 (7), September (2016).
(6) Emil Alexov and Guo-Wei Wei, Preface: Special Issue on Modeling Electrostatics in Molecular Biology (MEMB), Communications in Computational Physics 13 (1), i-v, (2013).
(5) W Guo, L Udpa, Y Wang, Guo-Wei Wei, S Zhao, Mathematical methods for images and surfaces, International Journal of Biomedical Imaging (2012).
(4) Guo-Wei Wei, L Udpa, Y Wang, S Zhao, Mathematical methods for images and surfaces, International Journal of Biomedical Imaging 2010(1), 918467 (2010).
(3) Guo-Wei Wei and Ge Wang, Special issue on recent advances in computational techniques for biomedical imaging, Communications in Numerical Methods in Engineering, 25(6), 581-582 (2009).
(2) Guo-Wei Wei and Ge Wang, Call for Papers: Special Issue on ‘Recent Advances in Computational Techniques for Biomedical Imaging, Communications in Numerical Methods in Engineering (CNM), Numerical Linear Algebra with Applications, 15(1) (2008).
(1) Guo-Wei and Ge Wang, Special Issue on ‘Recent Advances in Computational Techniques for Biomedical Imaging’, International Journal for Numerical Methods in Engineering (NME), International journal for numerical methods in engineering 73 (4), 596-596 (2008).
PAPERS
(370) Kelin Xia and Guo-Wei Wei, A review of geometric, topological and graph theory apparatuses for the modeling and analysis of biomolecular data (2016) arXiv:1612.01735.
(369) Duc Nguyen, Kaifu Gao, Jiahui Chen,
Rui Wang, and Guo-Wei Wei, Potentially highly potent drugs for 2019-nCoV, (2020).
(368) Kaifu Gao, Duc Nguyen, Rui Wang and Guo-Wei Wei, Machine intelligence design of 2019-nCoV drugs, (2020).
(367) Jiahui Chen, Rui Wang and Guo-Wei Wei, Review of the mechanisms of SARS-CoV-2 evolution and transmission, Chemical Science (2022).
(366) Yuta Hozumi, Rui Wang, Guo-Wei Wei, CCP: Correlated Clustering and Projection for Dimensionality Reduction, IEEE Transactions on Pattern Analysis and Machine Intelligence, (2022).
(365) Jian Liu, Dong Chen, and Guo-Wei Wei, Interaction homotopy and interaction homology, (2023).
(364) JunJie Wee and Guo-Wei Wei, Rapid response to fast viral evolution using AlphaFold 3-assisted topological deep learning, (2025).
(363) Jian Liu, Dong Chen, and Guo-Wei Wei, Persistent interaction topology in data analysis, (2024).
(362) Sean Cottrell and Guo-Wei Wei, Benchmarking the Topological Analysis of Spatial Transcriptomics, (2024).
(361) Xiang Liu, Zhe Su, Yongyi Shi, Yiying Ton, Ge Wang, and Guo-Wei Wei, Manifold Topological Deep Learning for Biomedical Data, (2025).
(360) Dong Chen, Bingxu Wang, Shunning Li, Wentao Zhang, Kai Yang, Yongli Song, Guo-Wei Wei, and Feng Pan, Superionic Ionic Conductor Discovery via Multiscale Topological Learning, (2024).
(359) Dong Chen, Gengzhuo Liu, Hongyan Du, Junjie Wee, Rui Wang, Jiahui Chen, Jana Shen, and Guo-Wei Wei, Drug resistance revealed by in silico deep mutational scanning and mutation tracker, (2025).
(358) Benjamin Jones and Guo-Wei Wei, Khovanov Laplacian and Khovanov Dirac for Knots and Links, (2024).
(357) Jian Jiang, Lu ke, Long Chen, Bozheng Dou, Yueying Zhu, Yazhou Shi, Huahai Qiu, Bengong Zhang, Tianshou Zhou, and Guo-Wei Wei, Chaotic learning — topology-enabled predictions from unpredictable chaotic systems, (2025).
(356) Jian Liu, Li Shen, and Guo-Wei Wei, Persistent Khovanov homology of tangles, (2024).
(355) Xingjian Xu, Chunmei Wang, Guo-Wei Wei, and Jiahui Chen, PLD-Tree: Persistent Laplacian Decision Tree for Protein-Protein Binding Free Energy Prediction, (2025).
(354) Zhe Su, Yiying Tong and Guo-Wei Wei, Topology-preserving Hodge Decomposition in the Eulerian Representation, Beijing Journal of Pure and Applied Mathematics, accepted (2025).
(353) N Hayes, X Wei, H Feng, E Merkurjev, GW Wei, Persistent Sheaf Laplacian Analysis of Protein Flexibility, The Journal of Physical Chemistry, (2025).
(352) D Chen, J Jiang, Z Su, GW Wei, Artificial Intelligence Approaches for Anti-Addiction Drug Discovery, Digital Discovery, (2025).
(351) Emilee Walden, Jiahui Chen, and Guo-Wei Wei, Dimensionality reduction for k-means clustering of large-scale influenza mutation datasets, Communication in Information and Systems, accepted (2025).
(350) Jian Jiang, Chunhuan Zhang, Lu Ke, Yueying Zhu, Nicole, Hayse, Huahai Qiu, Bengong Zhang, Tianshou Zhou, and Guo-Wei Wei, A Review of Imbalanced Data Challenge in Chemistry, Chemical Science (2024).
(349) Mushal Zia, Benjamin Jones, Hongsong Feng, Guo-Wei
Wei, Persistent Directed Flag Laplacian (PDFL)-Based Machine Learning for
Protein–Ligand Binding Affinity Prediction, Journal of Chemical Theory and
Computation, accepted (2025).
(348) Hongsong Feng, Jeffrey Y Zhao, Guo-Wei Wei, Multiscale differential geometry learning for protein flexibility analysis, Journal of Computational Chemistry, 46, e70073, (2025).
(347) Dong Chen, Chunlong Chen, and Guo-Wei Wei, Category-Specific Topological Learning of Metal-Organic Frameworks, Journal of Materials Chemistry A, 13, 9292 - 9303 (2025).
(346) Ruzhi Song, Fengling Li, Jie Wu, Fengchun Lei and Guo-Wei Wei, Multisacle Jones Polynomial and Persistent Jones Polynomial for Knot Data Analysis, AIMS Mathematics, 10(1), 1463-1487 (2025).
(345) Xiaoqi Wei and Guo-Wei Wei, Persistent topological Laplacians --- A survey, Mathematics, 13(2), 208 (2025).
(344) Ben Jones and Guo-Wei Wei, Persistent Directed Flag Laplacians, Foundations of Data Science, 7(3) (2025).
(343) J. Jiang, L Chen, Y Zhu, Y Shi, H Qiu, B Zhang, T Zhou, GW Wei, Proteomic Learning of Gamma-Aminobutyric Acid (GABA) Receptor-Mediated Anesthesia, Journal of Chemical Information and Modeling, https://doi.org/10.1021/acs.jcim.5c00114 (2025).
(342) Hongsong Feng, Li Shen, Jian Liu, and Guo-Wei Wei, Mayer homology learning prediction of protein-ligand binding affinities, Journal of Computational Biophysics and Chemistry, 24(2), 253-266 (2025).
(341) Xiaoqi Wei and Guo-Wei Wei, Persistent sheaf Laplacians, Foundations of Data Science, 7(2), 446-463 (2025).
(340) Saumya Nigam, Elvira Gjelaj, Rui Wang, Guo-Wei Wei, Ping Wang, Machine Learning and Deep Learning Applications in Magnetic Particle Imaging, Journal of Magnetic Resonance Imaging 61(1),42-51 (2025).
(339) Jian Jiang, Chunhuan Zhang, Long Chen, Lu Ke, Bozheng Dou, Yueying Zhu, Jie Liu, Huahai Qiu, Hongsong Feng, Bengong Zhang, Guo-Wei Wei, A Review of Transformer Models in Drug Discovery and Beyond, Journal Pharmaceutical Analysis, https://doi.org/10.1016/j.jpha.2024.101081 (2025).
(338) Yuta Hozumi and Guo-Wei Wei, Analyzing scRNA-seq data by CCP-assisted UMAP and t-SNE, PLOS One, 19(12), e0311791 (2024).
(337) JunJie Wee, Jiahui Chen, and Guo-Wei Wei, Preventing future zoonosis: SARS-CoV-2 mutations enhance human-animal cross-transmission, Computers in Biology and Medicine, 182, 109101 (2024).
(336) Zhe Su, Yiying Tong, and Guo-Wei Wei, Hodge decomposition of vector fields in Cartesian grids, SA’24: SIGGRAPH Asia 2024 Conference Papers, Article No.:90, pages 1-10, (2024).
(335) Gokul Bhusal, Ekaterina Merkurjev, and Guo-Wei Wei, Persistent Laplacian-enhanced Algorithm for Scarcely Labeled Data Classification, Machine Learning, 113, 7267-7292 (2024).
(334) Nicole Hayes, Ekaterina Merkurjev, and Guo-Wei Wei, Graph-Based Bidirectional Transformer Decision Threshold Adjustment Algorithm for Class-Imbalanced Molecular Data, Journal of Computational Biophysics and Chemistry, 23(10), 1339-1358 (2024).
(333) Zhe Su, Yiying Tong and Guo-Wei Wei, Persistent de Rham-Hodge Laplacians in Eulerian representation for manifold topological learning, AIMS Mathematics, 9(10) 27438-27470 (2024).
(332) JunJie Wee and Guo-Wei Wei, Benchmarking AlphaFold3's protein-protein complex accuracy and machine learning prediction reliability for binding free energy changes upon mutation, Journal of Chemical Information and Modeling, 64(16), 6676-6683 (2024).
(331) Jian Jiang, Long Chen, Bozheng Dou, Lu Ke, Yueying Zhu, Jie Liu, Bengong Zhang, Tianshou Zhou, and Guo-Wei Wei, Transformer Technology in Molecular Science, WIREs Computational Molecular Science, 14(4) e1725, (2024).
(330) Li Shen, Hongsong Feng, Funglian Li, Fundchun Lei, Jie Wu, and Guo-Wei Wei, Knot data analysis using multiscale Gauss link integral, Proceedings of the National Academy of Sciences, 121 (42) e2408431121 (2024).
(329) Li Shen, Jian Liu, and Guo-Wei Wei, Persistent Mayer Homology and Persistent Mayer Laplacian, Foundation of Data Science, 6(4), 584-612 (2024).
(328) Faisal Suwayyid and Guo-Wei Wei, Persistent Mayer Dirac, Journal of Physics: Complexity, 5, 045005 (2024).
(327) Theodore Papamarkou, Tolga Birdal, Michael Bronstein, Gunnar Carlsson, Justin Curry, Yue Gao, Mustafa Hajij, Roland Kwitt, Pietro Liò, Paolo Di Lorenzo, Vasileios Maroulas, Nina Miolane, Farzana Nasrin, Karthikeyan Natesan Ramamurthy, Bastian Rieck, Simone Scardapane, Michael T Schaub, Petar Veličković, Bei Wang, Yusu Wang, Guo-Wei Wei, Ghada Zamzmi, Position: Topological Deep Learning is the New Frontier for Relational Learning, The International Conference on Machine Learning, Position: Topological Deep Learning is the New Frontier for Relational Learning (openreview.net) (2024).
(326) Dong Chen, Jian Liu and Guo-Wei Wei, Multiscale Topology-enabled Structure-to-Sequence Transformer for Protein-Ligand Interaction Predictions, Nature Machine Intelligence, 6, 799-810 (2024).
(325) Sean Cottrell, Yuta Hozumi, and Guo-Wei Wei, K-Nearest-Neighbors Induced Topological PCA for scRNA Sequence Data Analysis, Computers in Biology and Medicine, 175, 108497 (2024).
(324) Jiahui Chen, Yongjia Xu, Xin Yang, Zixuan Cang, Weihua Geng, and Guo-Wei Wei, Poisson-Boltzmann based machine learning (PBML) model for electrostatic analysis, Biophysical Journal, 123(17) 2801-28-14 (2024).
(323) Li Shen, Jian Liu, and Guo-Wei Wei, Evolutionary Khovanov homology, AIMS Mathematics, 9(9): 26139-26165 (2024).
(322) Zhe Su, Yiying Tong, and Guo-Wei Wei, Hodge decomposition of single cell RNA velocity, Journal of Chemical Information and Modeling, 64, 3558--3568 (2024).
(321) Hongsong Feng; Sean Cottrell; Yuta Hozumi; Guo-Wei Wei, Multiscale differential geometry learning of networks with applications to single-cell RNA sequencing data, Computers in Biology and Medicine, 171, 108211 (2024).
(320) Yuta Hozumi, Guo-Wei Wei, Analyzing Single Cell RNA Sequencing with Topological Nonnegative Matrix Factorization, Journal of Computational and Applied Mathematics, 445, 115842 (2024).
(319) Jian Liu, Li Shen, and Guo-Wei Wei, ChatGPT for Computational Topology, Foundations of Data Science, 6, 221-250 (2024).
(318) Faisal Suwayyid and Guo-Wei Wei, Persistent Dirac of Paths in Digraphs and Hypergraphs, Foundation of Data Science, 6, 124-153 (2024).
(317) Emily Ribando-Gros, Rui Wang, Jiahui Chen, Yiying Tong, and Guo-Wei Wei, Combinatorial and Hodge Laplacians: Similarity and difference, SIAM Review, 66 (3), 575-601 (2024).
(316) Hongyan Du, Guo-Wei Wei, and Tingjun Hou, Multiscale Topology in Interactomic Network: From Transcriptome to Antiadiction Drug Repurposing, Briefings in Bioinformatics, 25 (2), bbae054 (2024).
(315) JunJie Wee, Jiahui Chen, Kelin Xia, and Guo-Wei Wei, Integration of persistent Laplacian and pre-trained transformer for protein solubility changes upon mutation, Computers in Biology and Medicine, 169, 107918 (2024).
(314) Sheik Ahmed Ullah, Xin Yang, Ben Jones, Shan Zhao, Weihua Geng, and Guo-Wei Wei, Bridging Eulerian and Lagrangian Poisson-Boltzmann solvers by ESES, Journal of Computational Chemistry, 45, 306-320 (2024).
(313) Sean Cottrell, Rui Wang, and Guo-Wei Wei, PLPCA: Persistent Laplacian-enhanced PCA for Microarray Data Analysis, Journal of Chemical Information and Modeling, 64, 7, 2405–2420 (2024).
(312) Long Chen, Jian Jiang, Bozheng Dou, Hongsong Feng, Jie Liu, Yueying Zhu, Bengong Zhang, Tianshou Zhou, and Guo-Wei Wei, Machine Learning Study of the Extended Drug-target Interaction Network informed by Pain Related Voltage-Gated Sodium Channels, Pain, 165 (4), 306-320 (2024).
(311) Saumya Nigam, Jeotikanta Mohapatra, Ashley V. Makela, Jessi Mercedes Rodriguez, Aixia Sun, Hanaan Hayat, Elizabeth Kenyon, Nathan A. Redman, George Jabin, Bin Gu, Mohamed Ashry, Lorenzo F. Sempere, Jiahui Chen, Guo-Wei Wei, Steven Bolin, Brett Etchebarne, J. Ping Liu, Christopher H. Contag, and Ping Wang, Shape anisotropy-governed high performance nanomagnetosol for in vivo magnetic particle imaging of lungs, Small, 20 (5) 2305300 (2024).
(310) Yuta Hozumi,
Kiyoto, Tanemura, and Guo-Wei Wei, Preprocessing of
single cell RNA sequencing data using Correlated Clustering and Projection,
Journal of Chemical Information and Modeling, 64, 7, 2829–2838 (2024).
(309) Rui Wang, Hongsong Feng, and Guo-Wei Wei, ChatGPT in drug discovery: A case study on anti-cocaine addiction drug development with chatbots, Journal of Chemical Information and Modeling, 63, 22, 7189–7209 (2023).
(308) Feng, Hongsong; Wang, Rui; Zhan, Chang-Guo, and Guo-Wei Wei, Multi-objective Molecular Optimization for Opioid Use Disorder Treatment Using Generative Network Complex, Journal of Medicinal Chemistry, 66, 17, 12479–12498 (2023).
(307) Yuchi Qiu and Guo-Wei Wei, Artificial intelligence-aided protein engineering: from topological data analysis to deep protein language models, Briefings in Bioinformatics, 24 (5) bbad289 (2023).
(306) Jiahui Chen, Daniel R. Woldring, Faqing Huang, Xuefei Huang, and Guo-Wei Wei, Topological deep learning based deep mutational scanning, Computers in Biology and Medicine, 164, 107258 (2023).
(305) Dong Chen, Jian Liu, Jie Wu, and Guo-Wei Wei, Persistent
hyperdigraph homology and persistent hyperdigraph Laplacians, Foundation of
Data Science, 5, 558-588 (2023).
(304) Bozheng Dou, Zailiang Zhu, Ekaterina Merkurjev, Lu Ke, Long Chen, Jian Jiang, Yueying Zhu, Jie Liu, Bengong Zhang, and Guo-Wei Wei, Machine Learning methods for Small Data Challenges in Molecular Science, Chemical Reviews, 123, 13, 8736–8780 (2023).
(303)
Hongsong Feng, Jian Jiang, and Guo-Wei Wei, Machine-learning Repurposing of
DrugBank Compounds for Opioid Use Disorder, Computers in Biology and
Medicine, 160, 106921 (2023).
(302) Li Shen, Hongsong Feng, Yuchi Qiu and Guo-Wei Wei, SVSBI: Sequence-based virtual screening of biomolecular interactions, Communications Biology, 6, 536, (2023).
(301) Dong Chen, Jian Liu, Jie Wu, Guo-Wei Wei, Feng Pan, and Shing-Tung Yau, Path topology in molecular and materials sciences, The Journal of Physical Chemistry Letters, 14, 954-964, (2023).
(300) Hongsong Feng, Rana Elladki, Jian Jiang, and Guo-Wei Wei, Machine-learning Analysis of Opioid Use Disorder Informed by MOR, DOR, KOR, NOR and ZOR-Based Interactome Networks, Computers in Biology and Medicine, 157, 106745 (2023).
(299) Hasaan Hayat, Rui Wang, Aixia Sun, Christiane L. Mallett, Saumya Nigam, Nathan Redman, Demarcus Bunn, Elvira Gjelaj, Nazanin Talebloo, Adam Alessio, Anna Moore, Kurt Zinn, Guo-Wei Wei; Jinda Fan, and Ping Wang, Deep learning-enabled quantification of simultaneous PET/MRI for cell transplantation monitoring, iScience, 26,107083 (2023).
(298) Zailiang Zhu, Bozheng Dou,Yukang Cao, Jian Jiang, Yueying Zhu, Dong Chen, Hongsong Feng, Jie Liu, Bengong Zhang, Tianshou Zhou, Guo-Wei Wei, TIDAL: Topology-Inferred Drug Addiction Learning, Journal of Chemical Information and Modeling, 63, 5, 1472–1489 (2023).
(297) Xiaoqi Wei, Jiehui Chen and Guo-Wei Wei, Persistent topological Laplacian analysis of SARS-Cov-2 variants, Journal of Computational Biophysics and Chemistry, 22, 569-587, (2023).
(296) Yao Zhang, Kaifu Gao, Dexin Sui, Tuo Zhang, Peixuan Yu, Yuhan Jiang, Min Su, Guo-Wei Wei, Jian Hu, Structural insights into the elevator-type transport mechanism of a bacterial ZIP metal transporter, Nature Communication, 14(1), 385 (2023).
(295) Hongsong Feng and Guo-Wei Wei, Virtual screening of DrugBank database for hERG blockers using topological Laplacian-assisted AI models, Computers in Biology and Medicine, 153, 106491 (2023).
(294) Yuchi Qiu and Guo-Wei Wei, Persistent spectral theory-guided protein engineering, Nature Computational Science, 3, 149-163 (2023).
(293) Jiahui Chen, Rui Wang, Yuta Hozumi, Gengzhuo Liu, Yuchi Qiu, Xiaoqi Wei and Guo-Wei Wei, Emerging dominant SARS-CoV-2 variants, Journal of Chemical Information and Modeling, 63, 335–342, (2023).
(292) Nicole Hayes, Ekaterina Merkurjev, and Guo-Wei Wei, Integrating Transformer and Autoencoder Techniques with Spectral Graph Algorithms for the Prediction of Scarcely Labeled Molecular Data, Computers in Biology and Medicine, 153, 106479 (2023).
(291) Ekaterina Merkurjev, Duc Duy Nguyen, and Guo-Wei Wei, Multiscale Laplacian Learning, Applied Intelligence, 53, 15727-15746, (2023).
(290) Rui Wang and Guo-Wei Wei, Persistent path Laplacian, Foundations of Data Science, 5, 26-55, (2023).
(289) Jiahui Chen, Yuchi Qiu, Rui Wang and Guo-Wei Wei, Persistent Laplacian projected Omicron BA.4 and BA.5 to become new dominating variants, Computers in Biology and Medicine, 151, 106262, (2022).
(288) Yuchi Qiu and Guo-Wei Wei, CLADE 2.0: Evolution-driven cluster learning-assisted directed evolution, Journal of Chemical Information and Modeling, 62, 19, 4629–4641 (2022).
(287) Jian Liu, Kelin Xia, Jie Wu, Stephen Yau, and Guo-Wei Wei, Biomolecular Topology: modelling and data analysis. Acta Mathematica Sinica, English Series, 38, 1901-1938 (2022).
(286) Jiahui Chen and Guo-Wei Wei, Artificial intelligence design of mutation-proof COVID-19 antibody therapies, Communications in Information and Systems, 22 (3), 339-361 (2022).
(285) Jiahui Chen and Guo-Wei Wei, Omicron BA.2 (B.1.1.529.2): High potential to becoming the next dominating variant, The Journal of Physical Chemistry Letters, 13, 3840-3849 (2022).
(284) Azzam Alfarraj and Guo-Wei Wei, Geometric algebra generation of molecular surfaces, Journal of the Royal Society Interface, 19 (189), 20220117 (2022).
(283) Kaifu Gao, Rui Wang, Jiahui Chen, Limei Cheng, Jaclyn Frishcosy, Yuta Huzumi, Yuchi Qiu, Tom Schluckbier, Xiaoqi Wei, and Guo-Wei Wei, Methodology-centered review of molecular modeling, simulation, and prediction of SARS-CoV-2, Chemical Reviews, 122, 13, 11287–11368 (2022).
(282) Hongsong Feng, Kaifu Gao, Dong Chen, Li Shen, Alfred J Robison, Edmund Ellsworth and Guo-Wei Wei, Machine learning analysis of cocaine addiction informed by DAT, SERT, and NET-based interactome networks, Journal of Chemical Theory and Computation, 18(4), 2703–2719 (2022).
(281) J Grbić, Jie Wu, Kelin Xia, and Guo-Wei Wei, Aspects of topological approaches for data science, Foundation of Data Science, 4(2), 165-216 (2022).
(280) Rui Wang, Jiahui Chen, Yuta Hozumi, Changchuan Yin, and Guo-Wei Wei, Emerging vaccine-breakthrough SARS-CoV-2 variants, ACS Infectious Diseases, 8, 3, 546–556 (2022).
(278) Limei Cheng, Yuchi Qiu, Brian J. Schmidt, and Guo-Wei Wei, Review of applications and challenges of quantitative systems pharmacology modeling and machine learning for heart failure, Journal of Pharmacokinetics and Pharmacodynamics, 49, 39-50, (2021).
(277) Yuchi Qiu, Jian Hu, Guo-Wei Wei, Cluster learning-assisted directed evolution, Nature Computational Science, 1(12), 809-818 (2021).
(276) Kaifu Gao, Rui Wang, Jiahui Chen, Jetze Tepe, Faqing Huang, and Guo-Wei Wei, Perspectives of SARS-CoV-2 main protease inhibitors, Journal of Medicinal Chemistry, 64, 16922-16955 (2021).
(275) Dong Chen, Jiaxin Zheng, Guo-Wei Wei, and Feng Pan,
Extracting Predictive Representations from Hundreds of Millions of Molecules, The
Journal of Physical Chemistry Letters, 12,
10793-10801 (2021).
(274) Kaifu Gao, Dong Chen, Alfred J. Robison, and Guo-Wei
Wei, Proteome-informed machine learning studies of cocaine addiction, The
Journal of Physical Chemistry Letters, 12,
11122-11134 (2021).
(273) Jiahui Chen, Weihua Geng, and Guo-Wei Wei, MLIMC: Machine learning-based implicit-solvent Monte Carlo, Chinese Journal of Chemical Physics, 34(6) 683-694 (2021).
(272) Rui Wang, Jiahui Chen, and Guo-Wei Wei, Mechanisms of SARS-CoV-2 evolution revealing vaccine-resistant mutations in Europe and America, The Journal of Physical Chemistry Letters, 12, 11850-11857 (2021).
(271) Qing Zhu, Yuzhe Du, Yoshiko Nomura, Rong Gao, Zixuan Cang, Guo-Wei Wei, Dalia Gordon, Michael Gurevitz, James Groome and Ke Dong, The voltage-sensing module of domain III in an insect sodium channel modulates the action of both α and β toxins, Insect Biochemistry and Molecular Biology, 137, 103625 (2021).
(270) Xiaoqi Wei and Guo-Wei Wei, Homotopy continuation for the spectra of persistent Laplacians, Foundations of Data Science, 3(4) 677-700 (2021).
(269) Jiahui Chen, Kaifu Gao, Rui Wang, and Guo-Wei Wei, Revealing the threat of emerging SARS-CoV-2 mutations to antibody therapies, Journal of Molecular Biology, 433, 167155 (2021).
(268) Rui Wang, Kaifu Gao, Jiahui Chen, and Guo-Wei
Wei, Vaccine-escape and fast-growing mutations in the United Kingdom, the
United States, Singapore, Spain, South Africa, and other COVID-19-devastated
countries, Genomics, 11, 2158-2170 (2021).
(267) Dong Chen, Kaifu Gao, Duc D Nguyen, Yi Jiang, Guo-Wei
Wei, and Feng Pan, Algebraic Graph-assisted Bidirectional Transformers for
Molecular Prediction, Nature Communications, 12, 3527 (2021).
(266) Timothy Szocinski; Duc D Nguyen; Guo-Wei Wei,
AweGNN: Auto-parametrized weighted element-specific graph neural networks, Computers in Biology and Medicine, 134, 104460
(2021).
(265) Jiahui Chen, Kaifu Gao,
Rui Wang, and Guo-Wei Wei, Prediction and mitigation of mutation threats to
COVID-19 vaccines and antibody therapies, Chemical Science, 12, 6929 - 6948 (2021).
(264) Rui Wang, Rundong Zhao, Emily Ribando-Gros, Jiahui Chen, Yiying Tong, and Guo-Wei Wei, HERMES: Persistent spectral graph software, Foundations of Data Science, 3, 67-97 (2021).
(263) Yuta Hozumi, Rui Wang, Changchuan Yin, and Guo-Wei Wei, UMAP-assisted K-means clustering of large-scale SARS-CoV-2 mutation datasets, Computers in Biology and Medicine, 131, 104264 (2021).
(262) Jasiel O. Strubbe-Rivera, Jiahui Chen, Benjamin A. West, Kristin N. Parent, Guo-Wei Wei, Jason N. Bazil, Modeling the effects of calcium overload on mitochondrial ultrastructural remodeling, Applied Sciences, 11, 2071 (2021).
(261) Jian Jiang, Rui Wang and Guo-Wei Wei, GGL-Tox: Geometric graph learning for toxicity prediction, Journal of Chemical Information and Modeling, 61, 1691-1700 (2021).
(260) Rui Wang, Jiahui Chen, Kaifu Gao, Yuta Hozumi, Changchuan Yin, and Guo-Wei Wei, Analysis of SARS-CoV-2 mutations in the United States suggests presence of four substrains and novel variants, Communications Biology, 4, 228 (2021).
(259) Yi Jiang, Dong Chen, Xin Chen,
Guo-Wei Wei and
Feng Pan, Topological representations of
crystalline compounds for the machine-learning prediction of materials
properties, npj Computational Materials, 7(1) 1-8 (2021).
(258) Jiahui Chen, Rui Wang, and Guo-Wei Wei, SARS-CoV-2 becoming more infectious as revealed by algebraic topology and deep learning, Communications in Information and Systems, 21(1), 31-36 (2021).
(257) Jiahui Chen, Kaifu Gao, Rui Wang, Duc Nguyen, and Guo-Wei Wei, Review of COVID-19 antibody therapies, Annual Review of Biophysics, 50, 1-30 (2021). ,
(256) Jiahui Chen, Rundong Zhao, Yiying Tong and Guo-Wei Wei, Evolutionary de Rham-Hodge method, Discrete and Continuous Dynamical Systems Series B, 26, 3785-3821 (2021).
(255)
KM Merz Jr, G De Fabritiis, and GW Wei, Generative models for molecular design,
Journal of Chemical Information and Modeling 60 (12), 5635-5636 (2020).
(254) Rui Wang,
Jiahui Chen, Yuta Hozumi, Changchuan Yin, and Guo-Wei Wei, Decoding
Asymptomatic COVID-19 infection and transmission, The Journal of Physical
Chemistry Letters, 11, 10007-10015 (2020).
(253) Duc Duy Nguyen, Kaifu Gao, Jiahui Chen, Rui Wang, and Guo-Wei Wei, Unveiling the molecular mechanism of SARS-CoV-2 main protease inhibition from 137 crystal structures using algebraic topology and deep learning, Chemical Sciences, 11, 12036 - 12046 (2020).
(252) Rui Wang, Yuta Hozumi, Yong-Hui Zheng, Changchuan Yin, and Guo-Wei Wei, Host immune response driving SARS-CoV-2 evolution, Viruses, 12, 1095 (2020).
(251) Rui Wang, Yuta Hozumi, Changchuan Yin, Guo-Wei Wei, Mutations on COVID-19 diagnostic targets, Genomics, 112, 5204-5213 (2020).
(250) Zixuan Cang, Elizabeth Munch, and Guo-Wei Wei, Evolutionary homology on coupled dynamical systems with applications to protein flexibility analysis, Journal of Applied and Computational Topology, 4, 481-507 (2020).
(249) Kaifu Gao, Duc Nguyen, Meihua Tu, and Guo-Wei Wei, Generative network complex for the automated generation of druglike molecules, Journal of Chemical Information and Modeling, 60 5682-5698 (2020).
(248) Ruiqiong Guo, Zixuan Cang, Jiaqi Yao, M. Kim, Erin
Deans, Guo-Wei Wei, Seung-gu Kang, and Heedeok Hong, Structural cavities
are critical to balancing stability and activity of a membrane-integral enzyme.
Proceedings of the National Academy of Sciences, 117 (36), 22146-22156
(2020).
(247) Rundong Zhao, Menglun Wang, Jiahui Chen, Yiying Tong and Guo-Wei Wei, The de Rham–Hodge Analysis and Modeling of Biomolecules, Bulletin of Mathematical Biology, 82, 1-38 (2020).
(246) Jiahui Chen, Rui Wang, Menglun Wang, and Guo-Wei Wei, Mutations strengthened SARS-CoV-2 infectivity, Journal of Molecular Biology, 432, 5212-5226 (2020).
(245) K Gao, DD Nguyen, J Chen, R Wang, GW Wei, Repositioning of 8565 existing drugs for COVID-19. The Journal of Physical Chemistry Letters, 11, 13, 5373–5382 (2020).
(244) Rui Wang, Yuta Hozumi, Changchuan Yin, and Guo-Wei Wei, Decoding SARS-CoV-2 transmission, evolution and ramification on COVID-19 diagnosis, vaccine, and medicine, Journal of Chemical Information and Modeling, 60, 5853-5865 (2020).
(243) Rui Wang, Duc
D Nguyen and Guo-Wei Wei, Persistent spectral graph, International
Journal for Numerical Methods in Biomedical Engineering, 36(9), e3376 (2020).
(242) Duc D. Nguyen and Guo-Wei Wei, Math and AI-based Repositioning of Existing Drugs for COVID-19, SIAM News, 53(4) (2020) https://sinews.siam.org/Details-Page/math-and-ai-based-repositioning-of-existing-drugs-for-covid-19
(241) Xin Chen, Dong Chen, Mouyi Weng, Yi, Jiang, Guo-Wei Wei and Feng Pan, Topology-Based Machine Learning Strategy for Cluster Structure Prediction, The Journal of Physical Chemistry Letters, 11, 11, 4392–4401 (2020).
(240)
Zixuan Cang and Guo-Wei Wei, Persistent cohomology for datasets with
heterogeneous information, SIAM Journal on
Mathematics of Data Science, 2 (2), 396-418
(2020).
(239) Kaifu Gao, Duc Duy Nguyen, Vishnu Sresht, Alan M. Mathiowetz, Meihua Tu, and Guo-Wei Wei, Are 2D fingerprints still valuable for drug discovery? Physical Chemistry Chemical Physics, 2 (16), 8373-8390 (2020).
(238) Jian Jiang, Rui Wang, Menglun Wang, Kaifu Gao, Duc D Nguyen and Guo-Wei Wei, Boosting tree-assisted multitask deep learning for small scientific datasets. Journal of Chemical Information and Modeling, 60 (3), 1235-1244 (2020).
(237)
David Bramer and Guo-Wei Wei, Atom-specific persistent homology and its
application to protein flexibility analysis, Computational and
Mathematical Biophysics, 8,
1-35 (2020).
(236) Duc
Nguyen, Zixuan Cang, and Guo-Wei Wei, A review of mathematical representations
of biomolecular data, Physical Chemistry Chemical Physics, 22,
4343-4367
(2020).
(235) Menglun Wang, Z. X. Cang, and Guo-Wei Wei, A
topology-based network tree for the prediction of protein-protein binding free
energy changes following mutation, Nature Machine Intelligence, 2, 116-123 (2020).
(234) Duc Duy Nguyen, Kaifu Gao, Menglun Wang, and Guo-Wei Wei, MathDL: Mathematical deep learning for D3R Grand Challenge 4, Journal of Computer Aided Molecular Design, 34, 131-147 (2020).
(233) Limei Cheng, Guo-Wei
Wei and Tarek Leil, Review of
quantitative systems pharmacological modeling of thrombosis, Communications in
Information and Systems, 19,
219-240 (2019).
(232) Christopher Grow, Kaifu Gao, Duc D
Nguyen and Guo-Wei Wei, Generative network complex (GNC) for drug discovery, Communications in Information and Systems, 19, 241-277
(2019).
(231) Rundong Zhao, Mathieu Desbrun, Guo-Wei Wei and Yiying Tong, 3D Hodge Decompositions of Edge- and Face-based Vector Fields, ACM Transactions on Graphics (TOG) 38 (6), 181 (2019).
(230) Guo-Wei Wei, Protein structure prediction beyond AlphaFold, Nature Machine Intelligence, Vol. 1, 336-337, (2019).
(229)
Duc D Nguyen and Guo-Wei Wei, AGL-Score: Algebraic Graph Learning Score for
Protein-Ligand Binding Scoring, Ranking, Docking, and Screening, Journal of
Chemical Information and Modeling, 59, 3291-3304, (2019).
(228) Duc D. Nguyen and Guo-Wei Wei, DG-GL: Differential geometry based geometric learning of molecular datasets, International Journal for Numerical Methods in Biomedical Engineering, 35 (3), e3179 (2019).
(227) Duc Duy Nguyen, Zixuan Cang, Kedi Wu, Menglun Wang, Yin Cao and Guo-Wei Wei, Mathematical deep learning for pose and binding affinity prediction and ranking in D3R Grand Challenges, Journal of Computer Aided Molecular Design, 33, 71-82 (2019).
(226) David Bramer and G. W.
Wei, Blind prediction of protein B-factor and flexibility, Journal of Chemical
Physics, 149, 134107 (2018).
(225)
Rundong Zhao, Menglun Wang, Yiying Tong and Guo-Wei Wei, A divide-and-conquer
strategy for large-scale Eulerian solvent excluded surface, Communications in Information and Systems,
18, 299-329 (2018).
(224)
Rundong Zhao, Zixuan Cang, Yiying Tong and Guo-Wei Wei, Protein Pocket Detection via
Convex Hull Surface Evolution and Associated Reeb Graph, Bioinformatics,
24 (17), i830-i837 (2018).
(223)
Kedi Wu, Zhixiong Zhao, Renxiao Wang and Guo-Wei Wei, TopP–S: Persistent Homology-Based Multi-Task Deep Neural
Networks for Simultaneous Predictions of Partition Coefficient and Aqueous Solubility, Journal of Computational
Chemistry, 39, 1444-1454 (2018).
(222)
Kedi Wu and Guo-Wei Wei, Quantitative toxicity prediction using topology based
multi-task deep neural networks, Journal of Chemical Information and Modeling, 58,
520-531 (2018).
(221) David Bramer and G. W. Wei, Multiscale weighted colored graphs for protein flexibility and rigidity analysis, Journal of Chemical Physics, 148, 054103 (2018). (This work was featured in AIP Scilight)
(220)
Ahmet Erdemir, Peter J. Hunter, Gerhard A. Holzapfel, Leslie M. Loew, John
Middleton, Christopher R. Jacobs, Perumal Nithiarasu, Rainlad Löhner, Guowei
Wei ,
Beth A. Winkelstein, Victor H. Barocas
, Farshid Guilak
, Joy P. Ku, Jennifer L. Hicks , Scott L. Delp, Michael Sacks , Jeffrey A. Weiss , Gerard A. Ateshian, Steven A.
Maas, and Andrew D. McCulloch,
Perspectives on Sharing Models and Related Resources in Computational
Biomechanics Research, Journal of Biomechanical
Engineering, 140, 024701, (2018).
(219)
Z. X. Cang, Lin Mu and Guo-Wei Wei, Representability of algebraic topology for biomolecules in machine
learning based scoring and virtual screening,
PLOS Computational Biology,
14(1), e100592 (2018).
(218) Yuri A.
Nedialkov, Kristopher Opron, Hailey L. Caudill1, Fadi Assaf, Amanda J.
Anderson, Robert I. Cukier, Guo-Wei Wei and Zachary F. Burton, Hinge action versus grip in
translocation by RNA polymerase, Transcription, 9,1-16 (2018)
(217)
Elizabeth Jurrus, Dave Engel, Keith Star, Kyle Monson, Juan Brandi, Lisa E
Felberg, David H Brookes, Leighton Wilson, Jiahui Chen, Karina Liles, Minju
Chun, Peter Li, Todd Dolinsky, Robert Konecny, David R Koes, Jens Erik Nielsen,
Teresa Head-Gordon, Weihua Geng, Robert Krasny, Guo-Wei Wei, Michael J Holst, J
Andrew McCammon, and Nathan A Baker,
Improvements to the APBS biomolecular solvation software suite, Protein Science, 27, 112-128 (2018)
(216) Bao Wang, Chengzhang Wang,
Kedi Wu and Guo-Wei Wei, Breaking the polar-nonpolar division in
solvation free energy prediction, Journal of Computational
Chemistry, 39, 217–232 (2018).
(215) Z. X. Cang and Guo-Wei Wei, Integration of element
specific persistent homology and machine learning for protein-ligand binding
affinity prediction, International Journal for Numerical
Methods in Biomedical Engineering, 34
(2), e2914 (2018).
(214) Guo-Wei Wei,
Mathematics at the eve of a historic transition in biology, Molecular Based Mathematical Biology, 5, 138-141 (2017).
(213)
Guo-Wei Wei, Persistent homology analysis of biomolecular data, SIAM News, 50
(10) December (2017).
(212) Z. X. Cang and Guo-Wei Wei, TopologyNet: Topology based
deep convolutional and multi-task neural networks for biomolecular property
predictions
, PLOS Computational Biology, 13(7),
e1005690 (2017).
(211) Z. X. Cang and Guo-Wei Wei, Element specific
persistent homology for the analysis and prediction of protein folding
stability upon mutation, Bioinformatics, 33, 3549-3557 (2017).
(210)
Duc D Nguyen, Tian Xiao, Menglun Wang and Guo-Wei Wei, Rigidity
strengthening: A
mechanism for protein-ligand binding, Journal of Chemical Information and Modeling, 57,
1715-1721 (2017).
(209) Bao Wang, Zhixiong Zhao,
Duc Nguyen and Guo-Wei Wei, Feature functional theory - binding predictor
(FFT-BP) for the blind prediction of binding free energy, Theoretical Chemistry
Account, 136, 55 (2017).
(208) Yin Cao, Bao Wang, Kelin
Xia and Guo-Wei Wei, Finite volume formulation of the MIB method for elliptic
interface problems, Journal of
Computational and Applied Mathematics, 321, 60-77 (2017).
(207) Duc D Nguyen, Bao Wang and
Guo-Wei Wei, Accurate,
robust and
reliable calculations of
Poisson-Boltzmann binding energies, Journal of Computational Chemistry, 38, 941-948 (2017).
(206) Duan Chen and Guo-Wei Wei, A Review of
Mathematical Modeling, Simulation and Analysis of Membrane Channel Charge
Transport,
Reference Module in Life Sciences, https://doi.org/10.1016/B978-0-12-809633-8.12044-8 (2017).
(205) Yongcheng Zhou
and Guo-Wei Wei, Variational Methods for
Biomolecular Modeling, in Variational Methods in Molecular Modeling, Edited by
Jianzhong Wu, Springer Science+Business Media Singapore, 181-221, (2017).
(204)
Beibei Liu, Bao Wang, Rundong Zhao, Yiying Tong and Guo-Wei Wei, ESES: software for Eulerian solvent excluded
surface, Journal of Computational
Chemistry, 38, 446-466 (2017).
(203)
Lin Mu, Kelin Xia and Guo-Wei Wei, Geometric
and electrostatic modeling using molecular rigidity functions, Journal of Computational and Applied Mathematics, 313, 18-37 (2017).
(202) Duc D Nguyen
and Guo-Wei Wei,
The impact of surface area, volume, curvature and Lennard-Jones
potential to solvation modeling, Journal of Computational Chemistry,
38, 24–36 (2017).
(200)
Guo-Wei Wei, Mathematical Molecular Bioscience and Biophysics, SIAM News, 49 (7), (2016).
(199)
Bao Wang, Zhixiong Zhao and Guo-Wei Wei, Automatic parametrization of non-polar
implicit solvent models for the blind prediction of solvation free energies,
Journal of Chemical Physics, 145, 124110 (2016).
(198) Duc D Nguyen, Kelin Xia
and Guo-Wei Wei,
Generalized flexibility-rigidity index, Journal of Chemical
Physics, 144,
234106 (2016).
(197)
Kristopher Opron, Kelin Xia, Zachary F. Burton
and Guo-Wei Wei, Flexibility-Rigidity
Index for Protein-Nucleic Acid Flexibility and
Fluctuation Analysis,
Journal of Computational Chemistry, 37,
1283–1295 (2016).
(196) Zachary F. Burton,
Kristopher Opron, Guowei Wei and James H. Geiger, A model for genesis
of transcription systems,
Transcription, 7, 1-13
(2016).
(195) Bao Wang and Guo-Wei Wei, Object-oriented persistent homology, Journal of
Computational Physics, 305, 276-299 (2016).
(194) Zixuan Cang, Lin Mu, Kedi
Wu, Kris Opron, Kelin Xia and Guo-Wei Wei, A topological approach to protein
classification, Molecular based Mathematical Biology, 3, 140-162 (2015)
(193) Kelin Xia, Kristopher
Opron and Guo-Wei Wei, Multiscale Gaussian network model (mGNM) and multiscale
anisotropic network model (mANM), Journal of Chemical Physics, 143, 204106 (2015).
(192) Bao Wang and Guo-Wei Wei, Parameter optimization in
differential geometry based solvation models, Journal
of Chemical Physics, 143, 134119 (2015).
(191) Kelin Xia, Zhixiong Zhao and
Guo-Wei Wei,
Multiresolution persistent homology for excessively large
biomolecular datasets, Journal of Chemical Physics, 143, 134103 (2015).
(190) Kristopher Opron, Kelin
Xia, and Guo-Wei Wei, Communication: Capturing protein multiscale thermal
fluctuations, Journal of Chemical Physics, 142, 211101 (2015).
(189) Jinkyoung Park, Kelin Xia
and G.W. Wei, Atomic
scale design and three-dimensional simulations of nanofluidic systems,
Microfluidics and Nanofluidics, 19, 665-692 (2015).
(188) Kelin Xia
and Guo-Wei Wei, Multidimensional persistence in biomolecular data, Journal of Computational
Chemistry, 36, 1502-1520 (2015).
(187) Kelin Xia, Zhixiong Zhao and
Guo-Wei Wei,
Multiresolution topological simplification, Journal of Computational
Biology, 22, 9, 1-5 (2015).
(186) Bao Wang, Kelin Xia and Guo-Wei Wei,
Matched interface and boundary method for 3D elastic interface problems, Journal of Computational Physics, 294, 405-438 (2015).
(185) Kelin Xia
and Guo-Wei Wei, Persistent topology for cryo-EM data analysis, International Journal for Numerical Methods in
Biomedical Engineering, 31, e02719 (2015).
(184) Langhua
Hu, Duan Chen and
Guo-Wei Wei, Geometric
and phonon effects on
nano transistors, Journal of Computational Physics, 290, 169-187 (2015).
(183) Bao Wang, Kelin Xia and Guo-Wei Wei,
Matched interface and boundary method for irregular elastic
interface problems, Journal of Computational and Applied Mathematics, 285,
203-225 (2015).
(182) Kelin Xia, X. Feng, Yiying
Tong and Guo-Wei
Wei, Persistent
homology for the quantitative
prediction of fullerene stability, Journal of
Computational Chemistry, 36, 408-422 (2015).
(181) Langhua Hu, Siyang Yang and Guo-Wei Wei,
Simulation of inviscid compressible flows using PDE transform. Commun. Comput. Phys., 16, 1201-1238 (2014).
(180) Kelin Xia and Guo-Wei Wei, A Galerkin formulation of the MIB method for three dimensional elliptic interface problems, Computers and Mathematics with
Applications, 68, 719–745, (2014).
(179) Kelin Xia,
Meng Zhan, and
Guo-Wei Wei, MIB
Galerkin method for elliptic interface problems,
Journal of Computational and Applied Mathematics, 272. 195-220 (2014).
(178) Kelin Xia
and Guo-Wei Wei, Persistent homology analysis of protein structure,
flexibility and folding,
International Journal for Numerical Methods in
Biomedical Engineering, 30,
814-844 (2014).
(177) Kristopher Opron, Kelin
Xia, and Guo-Wei Wei, Fast and anisotropic flexibility-rigidity index for
protein flexibility and fluctuation analysis, Journal of Chemical Physics,
140(23),
(176) Kelin Xia and Guo-Wei Wei,
Molecular nonlinear dynamics and protein thermal uncertainty quantification,
Chaos, 24, 013103 (2014).
(175) Shan Zhao and
Guo-Wei Wei, A unified discontinuous Galerkin
framework for time
integration, Mathematical Methods in the Applied Sciences, 37, 1042-1071 (2014).
(174) Kelin Xia,
Xin Feng, Zhan Chen, Yiying Tong
and Guo-Wei Wei, Multiscale geometric modeling of macromolecules I: Cartesian
representation, Journal of Computational Physics, 257, 912-936 (2014).
(173) Kelin Xia, and Guo-Wei Wei, A
stochastic model for protein flexibility analysis, Physical Review E, 88,
062709 (2013).
(172)
X. Feng, Kelin
Xia, Zhan Chen, Yiying
Tong and Guo-Wei
Wei, Multiscale
geometric modeling of macromolecules II: Lagrangian
representation, Journal of Computational Chemistry, 34, 2100-2120 (2013).
(171) Kelin Xia, Kristopher
Opron and Guo-Wei Wei, Multiscale multiphysics and multidomain models —
Flexibility and rigidity, Journal of Chemical Physics, 139, 194109 (2013).
(170) L. Mu, J. P. Wang, G. W.
Wei, X. Ye and S. Zhao, Weak
Galerkin
methods for second
order elliptic interface problems, Journal
of Computational Physics, 250, 106-125 (2013).
(169) Michael Daily, Jaehun Chun, Alejandro
Heredia-Langner, Guo-Wei Wei, and Nathan Baker, Origin of parameter degeneracy and
molecular shape relationships in geometric-flow calculations of solvation free
energies. Journal of Chemical Physics, 139, 204108 (2013).
(168) Guo-Wei Wei, Multiscale
multiphysics and multidomain models I: Basic theory, Journal of Theoretical and
Computational Chemistry, 12(8), 1341006 (2013)
(167) Jinkyoung Park and G.W. Wei, A molecular level prototype for mechanoelectrical transducers in mammalian hair cells, Journal of Computational
Neuroscience, 35, 231-241, (2013).
(166) Dennis G. Thomas, Jaehun Chun, Zhan
Chen, Guo-Wei Wei, Nathan A. Baker, Parameterization of a geometric flow implicit solvation model, Journal of Computational Chemistry, 24, 687-695 (2013)
(165) Emil Alexov and
Guo-Wei Wei, Preface: Special issue on modeling electrostatics in molecular biology (MEMB), Commun. Comput. Phys., 13(1) 1-5, (2013).
(164) Duan Chen
and Guo-Wei Wei, Quantum
dynamics in continuum
models for proton
transport I: Basic formulation, Communication in
Computational
Physics, 13, 285-324 (2013)
(163) Langhua
Hu, Duan
Chen and Guo-Wei Wei,
High-order
fractional partial differential
equations for molecular surface construction, Molecular Based
Mathematical
Biology, 1-25 (2012).
(162) X. Feng, Kelin
Xia, Yiying Tong and
Guo-Wei Wei, Geometric modeling of
organelles,
subcellular
structures and multiprotein complexes, International Journal for
Numerical Methods in
Biomedical Engineering, 28,
1198-1223 (2012).
(161) Zhan Chen, Shan
Zhao, Jaehun Chun, Dennis G. Thomas, Nathan Baker, Peter Bates and
Guo-Wei Wei, Variational approach
for nonpolar solvation
analysis, Journal of Chemical Physics, 137, 084101 (2012).
(160) Anita T. Layton and Guo-Wei Wei, Editorials: Interface methods for biological and biomedical problems, International Journal for Numerical Methods in Biomedical Engineering, 28, 289–290, (2012)
(159) Duan Chen
and Guo-Wei Wei, Quantum
dynamics in continuum
models for proton
transport --- Generalized correlation, Journal of Chemical Physics, 136, 134109
(2012)
(158) Guo-Wei Wei, Qiong Zheng, Zhan Chen,
and Kelin Xia,
Variational multiscale models for
charge
transport, SIAM Review. 54(4), 699-754
(2012).
(157) Yang Wang, Guo-Wei
Wei and Siyang
Yang, Selective
extraction of entangled textures via adaptive PDE transform, Int.
J. Biomed Imaging, Volume 2012 (2012), Article ID 958142 (2012).
(156) Langhua
Hu and Guo-Wei Wei, Nonlinear
Poisson equation for heterogeneous media.
Biophysical Journal,
103, 758–766 (2012).
(155) Duan Chen, Zhan
Chen and Guo-Wei Wei, Quantum
dynamics in continuum
models for proton
transport II: Variational solvent-solute interface, International Journal for Numerical Methods in
Biomedical
Engineering, 28, 25-51
(2012)
(154) Qiong Zheng, Siyang
Yang and Guo-Wei
Wei, Molecular
surface generation using
PDE transform. International Journal for Numerical Methods in
Biomedical Engineering, 28, 291-316
(2012)
(153) Yang Wang, Guo-Wei
Wei and Siyang
Yang, Model
decomposing
evolution equations, Journal of Scientific Computing, 50, 495-518 (2012).
(152) Yang
Wang, Guo-Wei
Wei and Siyang Yang,
Empirical model decomposition using
local spectral evolution
kernels, Journal of
Scientific
Computing, 50, 629-664 (2012).
(151) Kelin Xia,
Meng Zhan, Decheng
Wan and Guo-Wei
Wei, Adaptively deformed mesh based matched
interface and boundary (MIB)
method for
elliptic
interface problems, Journal of Computational Physics,
231, 1440–1461 (2012).
(150) Zhan Chen and G. W. Wei, Differential
geometry
based salvation model
III: Quantum formulation, Journal of
Chemical Physics, 135,
194108 (2011).
(149) Qiong Zheng and Guo-Wei Wei, Poisson-Boltzmann-Nernst-Planck model.
Journal of Chemical
Physics, 134 (19),
194101, (2011) (It was
the most downloaded
in JCP in
May 2011)
(148) Kelin Xia,
Meng Zhan and
Guo-Wei Wei, The
matched interface and
boundary (MIB)
method for multi-domain elliptic interface problems.
Journal of Computational Physics, 230, 8231–8258 (2011)
(147) Yang Wang, Guo-Wei
Wei and Siyang
Yang, Partial differential equation transform ---
variational
formulation and Fourier analysis ,
International
Journal for Numerical Methods in
Biomedical Engineering, 27, 1996-2020, (2011).
(146) Qiong Zheng, Duan
Chen and Guo-Wei
Wei, Second-order
Poisson-Nernst-Planck
solver for ion
transport. Journal of
Computational Physics, 230, 5239-5262 (2011)
(145) Zhan Chen, Nathan
Baker and G.
W. Wei, Differential
geometry
based salvation model
II: Lagrangian formulation (62
pages), Journal
of Mathematical Biology, 63, 1139–1200,
(2011).
(144) Weihua Geng
and G.W. Wei, Multiscale
molecular dynamics via
the matched interface
and boundary (MIB)
method, Journal of
Computational Physics, 230, 435-457 (2011).
(143) Duan Chen, Zhan
Chen, Changjun Chen, Weihua Geng and
Guo-Wei Wei, MIBPB: A software package for
electrostatic analysis, Journal of
Computational Chemistry, 32, 756–770 (2011).
(142) G. W. Wei, Lalita Udpa, Yang
Wang and Shan Zhao,
Editorial: Mathematical methods
for images and surfaces, International Journal of
Biomedical Imaging, Volume 2010,
Article ID 918467, 3
pages (2010).
(141) Zhan Chen, Nathan
Baker and G.
W. Wei, Differential
geometry based solvation model
I: Eulerian formulation, Journal of
Computational Physics, 229, 8231-8258 (2010).
(140) Duan Chen
and Guo-Wei Wei, Modeling
and simulation of
nano-electronic
devices, Journal of Computational Physics, 229, 4431-4460, (2010).
(139) Changjun Chen, Rishu Saxena,
and Guo-Wei Wei,
Differential geometry based
multiscale model for
virus capsid dynamics, Int.
J. Biomed Imaging, Volume 2010,
Article ID 308627, 9
pages (2010).
(138) Guo-Wei, Wei, Differential geometry
based multiscale models, Bulletin
of Mathematical Biology, volume 72,
1562-1622,
(2010).
(137) C.H.W.
Ng, Y.B. Zhao, Y. Xiang and
G.W. Wei, On
the accuracy and
stability of a
few differential quadrature formulations for
the vibration analysis of beams,
Int. J. Engng.
Applied Sci. 1 (4), 1-25 (2009).
(136) G.W.
Wei and G. Wang, Editorial:
Special issue on recent
advances in computational techniques for biomedical imaging, Commun.
Numer. Methods Engng,
25, 581-582 (2009)
(135) P.
Bates, Z. Chen, Y.H.
Sun, G.W. Wei and
S. Zhao, Geometric and
potential driving formation and
evolution of biomolecular surfaces,
J. Math. Biol. 59, 193-231 (2009)
(134) Shan Zhao
and G.W. Wei, Matched interface and
boundary
(MIB) for the implementation of boundary conditions in high order central finite
differences, Int.
J. Numer. Meth.
Engng. 77, 1690-1730 (2009)
(133) Duan Chen,
G.W. Wei, X.
Cong and Ge Wang, Computational methods for optical molecular
imaging, Commun. Numer.
Methods Engng, 25, 1137-1161(2008).
(132) S.N.
Yu, Y. Xiang and G.W. Wei, Matched interface and boundary (MIB) method
for the vibration analysis of plates,
Commun. Numer. Methods Engng,
25, 923-950 (2009).
(131) S.N.
Yu and G.W. Wei, Three dimensional matched interface and
boundary
(MIB) method for geometric singularities, J.
Comput. Phys. 227, 602-632 (2007).
(130) W.H.
Geng, S.N. Yu and
G.W. Wei, Treatment of
charge singularities in implicit solvent
models, J.
Chem. Phys., 127,
114106 (20 pages) (2007). Also available at the
Virtual Journal of Biological Physics Research October 1,
2007
(129) P.
Bates, G.W. Wei and
S. Zhao, Minimal molecular
surfaces and their
applications, J.
Comput. Chem., 29,
380-391
(2008).
(128) S.
N. Yu, W.
H. Geng and
G.W. Wei, Treatment of geometric singularities in
implicit
solvent models, J.
Chem. Phys., 126,
244108 (13 pages)
(2007). Also available at
the Virtual Journal of Biological Physics Research July 1,
2007.
(127) Y.C.
Zhou, M. Feig and
G.W. Wei, Highly accurate
biomolecular electrostatics in
continuum dielectric environments, J.
Comput. Chem. 29, 87-97 (2008).
(126) G.W.
Wei and S. Zhao, On
the validity of
``A proof that
the discrete singular
convolution (DSC)/Langrange-distributed approximation function (LDAF)
method is
inferior to high order finite
differences
'', J.
Comput. Phys., 226,
2389-2392
(2007).
(125) S.
N. Yu, Y.
C. Zhou and
G. W. Wei, Matched
interface and boundary (MIB)
method for
elliptic problems with sharp-edged interfaces, J.
Comput. Phys. 224, 729-756 (2007).
(124) G.W.
Wei, Editoral: Recent advances in mathematical methods for
the analysis of biomedical image, International Journal of
Biomedical Imaging, vol.
2006,
70578, 1, (2006).
(123) S.F.
Shieh, Y.Q. Wang , G.W.
Wei and C.-H. Lai, Mathematical analysis
of the wavelet
method of chaos
control, J.
Math. Phys., 47,
082701 (2006).
(122) Y.C.
Zhou and G.W. Wei, On the
fictitious-domain and interpolation formulations of
the matched interface and
boundary
(MIB) method, J.
Comput. Phys. 219, 228-246 (2006).
(121) Ge Wang,
Haiou Shen Wenxiang Cong, Shan
Zhao and G.W. Wei, Temperature modulated
bioluminescence tomography, Optics Express, 14 (17)
7852-7871 (2006).
(120) L. Zhang, Y. Xiang and
G.W. Wei, Local adaptive
differential quadrature for
free vibration analysis of
cylindrical shells with
various boundary conditions, International Journal of Mechanical Sciences, 48,
1126-1138
(2006).
(119) Y.H.
Sun, P.R. Wu, G.W.
Wei and G. Wang, Evolution operator
based single-step method
for image processing, Int.
J. Biomed. Imaging, 83847,
1-27 (2006).
(118) Y.H.
Sun, Y.C. Zhou, S.
G. Li and
G.W. Wei, A
windowed Fourier spectral
scheme for hyperbolic conservation laws, J.
Comput. Phys. ,
214, 466-490
(2006).
(117) Y.C.
Zhou, S. Zhao, M.
Feig and G.
W. Wei, High
order matched interface
and boundary (MIB)
schemes for
elliptic equations with
discontinuous
coefficients and singular
sources, J.
Comput. Phys. ,
213, 1-30, (2006).
(116) C.W.
Lim, Z.R. Li, Y.
Xiang, G.W. Wei and
C.M. Wang, On
the missing modes when
using the exact
frequency relationship between Kirchhoff and
Mindlin plates, Advances in
Vibration
Engineering, 4, 221-248, (2005).
(115) Y.-C.
Lai, Z. Liu, G.-W.
Wei, C. H. Lai, Reply to
``Comment on `Shadowability of
statistical averages in
chaotic systems''', Physical Review
Letters,
94, 219403 (2005).
(114) S.G.
Guan, C.H. Lai and
G.W. Wei, Phase synchronization between
two essentially different chaotic systems, Phys.
Rev. E ,
72, 016205 (2005).
(113) S.G.
Guan, C.H. Lai and
G.W. Wei, Bistable chaos without symmetry
in generalized synchronization, Phys.
Rev. E ,
71, 036209 (2005).
(112) S.N.
Yu, S. Zhao
and G.W. Wei, Local spectral time
splitting method for
first and second
order partial differential equations, J.
Comput. Phys., 206,
727-780
(2005).
(111) S.
Zhao, G.W. Wei and
Y. Xiang, DSC analysis of free-edged beams by an
iteratively
matched boundary method, J. Sound Vibr., 284,
487-493
(2005).
(110) S.
Zhao and G.W. Wei, Option valuation by
using discrete singular convolution, Appl.
Math. Comput., 167, 383-418 (2005).
(109) C.W.
Lim, Z.R. Li and
G.W. Wei, DSC-Ritz method
for the high frequency mode analysis of thick
shallow shells, Int.
J. Numer. Meth.
Engng., 62, 205-232 (2005).
(108) Y.S.
Hou, G.W. Wei and
Y. Xiang, DSC-Ritz method
for the vibration analysis of Mindlin plates, Int.
J. Numer. Meth.
Engng., 62, 262-288 (2005).
(107) S.
Zhao and G.W. Wei, Tensor product derivative matching
for wave propagation in
inhomogeneous
media, Microwave Optical Techn.
Lett., 43(1), 69-77 (2004).
(106) S.
Guan, G.W. Wei and
C.H. Lai, Controllability of flow
turbulence, Phys.
Rev. E, 69,
066214 (2004).
(105) S.
Zhao and G.W. Wei, High order FDTD
methods via derivative
matching for Maxwell's equations with material interfaces, J.
Comput. Phys., 200, 60-103, (2004).
(104) C.H.W.
Ng, Y.B. Zhao and
G.W. Wei, Comparison of the
DSC and GDQ methods for the
vibration
analysis of plates, Comput. Methods Appl. Mech.
Engng., 193, 2483-2506 (2004).
(103) G.
Bao, G.W. Wei, and
S. Zhao, Numerical solution of
the Helmholtz equation with
high wave numbers, Int.
J. Numer. Meth.
Engng., 59, 389-408 (2004).
(102) Y.
Xiang and G.W.
Wei, Exact solution for
buckling and vibration of
stepped
rectangular Mindlin plates, Int.
J. Solid Struct. ,
41, 279-294 (2004).
(101) M.
Zhan, X. Wang, X. Gong, G.W. Wei, and C.-H.
Lai, Complete synchronization and
generalized synchronization of
one -way coupled time-delayed systems,
Phys. Rev. E, 68, 036208
(2003).
(100) S.
Guan, C.-H. Lai and
G.W. Wei, A
new wavelet method for
characterizing
turbulence, Comput. Phys.
Commun. 155, 77-91 (2003).
(99) Ying Wang,
Y.B. Zhao and
G.W. Wei, A
note on the
numerical solution of high-order differential equations, J.
Comput. Appl. Math., 159,
387-398
(2003).
(98) W.Z.
Bao, F.F. Sun and G.W.
Wei, Numerical methods for
the generalized Zakharov system, J.
Comput. Phys., 190,
201-228 (2003).
(97) Z.H.
Shao , G.W.
Wei and S.
Zhao, DSC time-domain solution of Maxwell's equations, J.
Comput. Phys., 189,
427-453 (2003).
(96) Y.C.
Zhou and G.W. Wei, High-resolution conjugate filters
for the simulation of
flows, J.
Comput. Phys., 189,
150-179
(2003).
(95) S.
Zhao and G.W. Wei, Comparison of the
discrete
singular convolution and three other
numerical
schemes for Fisher's equation, SIAM J.
Sci. Comput.,25, 127-147 (2003).
(94) G.
Bao, G.W. Wei and
S. Zhao, Local
spectral time-domain method for
electromagnetic
wave propagation, Optics Letters, 28, 513-515 (2003).
(93) Z.
H. Shao, Z. Shen, Q. He and
G.W. Wei, A
generalized
higher-order
finite difference time
domain method and its
application in guided-wave problems,
IEEE T. Microwave Theory
Tech., 51, 856-861 (2003).
(92) Y.C.
Zhou, Y. Gu and G.W. Wei, Shock-capturing with natural high
frequency
oscillations, Int. J.
Numer. Methods in
Fluid, 41, 1319-1338 (2003).
(91) Y.
Gu, Y.C. Zhou and
G.W. Wei, Conjugate filters with
spectral-like
resolution for 2D incompressible flows, Computers and Fluids,
33, 777-794 (2003).
(90) S.
Guan, Y.C. Zhou, G.W.
Wei and C.-H. Lai, Controlling flow
turbulence, Chaos, 13, 64-70 (2003).
(89) S.
Guan, C.-H. Lai and
G.W. Wei, On
geometry and boundary
control of pattern
formation and competition, Physica
D, 176, 19-43 (2003).
(88) Y.
Gu and G.W.
Wei, Conjugated filter
approach for shock capturing,
Commun. Numer. Meth.
Engng.,
19, 99-110 (2003).
(87) Y.C.
Zhou, B. S.
V. Patnaik, D.C.
Wan and G.
W. Wei, DSC
solution for flow in
a staggered double lid
driven
cavity, Int. J.
Numer. Methods in
Engng. ,57, 211-234 (2003).
(86) S.
Zhao and G.W. Wei, Jump process analysis for
the trend estimation of
time series, Comput.
Statist. Data Anal.,
42, 219-241 (2003).
(85) G.W.
Wei, M. Zhan, and
C.-H. Lai, Tailoring wavelets for
chaos
control, Phys. Rev.
Lett. 89, 284103
(2002). This
work was highlighted in Physical Review Letters and featured in Nature.
(84) G.
W. Wei and
Y. Q. Jia, Synchronization based
image edge detection, Europhys. Lett.
59, 814-819 (2002).
(83) Y.-C. Lai, Z.H. Liu, G.W. Wei, and
C.-H. Lai, Shadowing of statistical averages in
chaotic systems, Phys.
Rev. Lett .
89, 184101 (2002).
(82) M.
Zhan, G.W. Wei, C.-H.
Lai, Y.-C. Lai and
Z.H. Liu, Coherent
resonance near Hopf
bifurcation
from chaos, Phys.
Rev. E 66,
036201 (2002).
(81) G.W.
Wei, and Y. Gu, Conjugated filter approach for solving Burger's equation, J.
Comput. Appl. Math., 149,
439-456
(2002).
(80) Y.
Xiang, Y.B. Zhao and
G.W. Wei, Closed
form solutions for vibration of multi-span rectangular plates, Int.
J. Mech. Sci. ,
44, 1195-1218 (2002).
(79) D.C.
Wan, B.S.V. Patnaik
and G.W. Wei, Discrete singular convolution-finite subdomain method for
the solution of incompressible viscous flows,
J. Comput. Phys.
180, 229-255 (2002).
(78) Y.
Xiang and G.W.
Wei, Exact solutions for the
vibration of multi-span rectangular Mindlin plates,
Journal of Vibration and Acoustics,
Trans. ASME, 124,
545-551
(2002).
(77) G.W.
Wei, Oscillation reduction by anisotropic diffusions, Comput. Phys.
Commun. , 144 ,
417-342 (2002).
(76) G.W.
Wei, Y.B. Zhao, and
Y. Xiang, A
novel approach for the
analysis of high frequency vibrations, J. Sound and Vibration ,
257, 207-246 (2002).
(75) Y.B.
Zhao and G.W. Wei, DSC analysis rectangular plates with
nonuniform
boundary conditions, J. Sound and
Vibration,
255, 203-225 (2002).
(74) G.W.
Wei and S. Zhao, Synchronization and
information
processing by an on-off coupling,
Phys. Rev. E, 65,
056210 (2002).
(73) Y.
Xiang, Y.B. Zhao and
G.W. Wei, Discrete singular convolution and
its application to the
analysis of plates with
internal
supports. II Complex supports, Int.
J. Numer. Methods Engng.
, 55, 947-971 (2002).
(72) G.W.
Wei, Y.B. Zhao and
Y. Xiang, Discrete singular convolution and
its application to
the analysis of plates
with internal supports, I Theory
and algorithm, Int.
J. Numer. Methods Engng.
, 55, 913-946 (2002).
(71) B.F.
Feng and G.W. Wei, A comparison of the
spectral and the discrete singular convolution schemes for
the KdV-type equations, J.
Comput. Appl. Math. ,
145, 183-188 (2002).
(70) Z.J.
Hou and G.W. Wei, A new
approach for edge detection,
Pattern Recognition, 35(7) ,
1559-1570 (2002).
(69) B.
S. V. Patnaik and
G.W. Wei, Controlling wake turbulence [Phys.
Rev. Lett. 88, 054502
(2002)], Phys. Rev. Lett. , 88, 127901
(2002).
(68) Y.B.
Zhao, G.W. Wei, and
Y. Xiang, Plate
vibration under irregular internal supports, Int.
J. Solids and
Structures,
39, 1361-1383 (2002).
(67) S.
Guan, C.-H. Lai and
G.W. Wei, A wavelet method for
the
characterization of spatiotemporal patterns, Physica D ,
163 , 49-79 (2002).
(66) D.C.
Wan, Y.C. Zhou and
G.W. Wei, Numerical solution
of incompressible flows by
the discrete singular convolution,
Int. J. Numer.
Methods
Fluid, 38 ,789-810 (2002).
(65) M.
Zhan, G.W. Wei and
C.-H. Lai, Transition from intermittence to periodicity in lag
synchronization
in coupled Rossler oscillators, Phys.
Rev. E ,
65, 036202 (2002).
(64) S.
Y. Yang, Y.
C. Zhou and
G.W. Wei, Comparison of the
discrete
singular convolution algorithm
and the Fourier pseudospectral methods
for solving partial
differential equations, Comput. Phys. Commun. , 143 ,
113-135 (2002).
(63) B.
S. V. Patnaik, and
G.W. Wei, Controlling wake turbulence,
Phys. Rev. Lett. ,
88 , 054502 (2002). This work was featured in Physical Review Focus
and Wissenschat-online.
(62) Y.B.
Zhao, G.W. Wei, and
Y. Xiang, Discrete singular convolution for the
prediction of high frequency vibration of
plates, Int. J. Solids and Struct., 39, 65-88 (2002).
(61) G.W.
Wei, H. Wang, D.J.
Kouri, M. Papadakis, I.A.
Kakadiaris, and D.K. Hoffman, On the
mathematical
properties of distributed approximating functionals,
J. Math. Chem., 30 , 83-107 (2001).
(60) Z.
Shi, G.W. Wei, D.J.
Kouri, D.K. Hoffman, Z.
Bao, Lagrange wavelets for signal
processing,
IEEE T. Image Processing,
10 , 1488-1508 (2001).
(59) D.C.
Wan, B.S.V. Patnaik and
G.W. Wei, A
new benchmark quality solution for the
buoyancy driven cavity by
discrete
singular convolution, Numer. Heat
Transfer B - Fundamentals
, 40 ,
199-228 (2001).
(58) G.W.
Wei, Y.B. Zhao and
Y. Xiang, The
determination
of the natural frequencies of
rectangular
plates with mixed
boundary
conditions by discrete singular
convolution,
Int. J. Mech.
Sci. , 43 ,
1731-1746 (2001).
(57) S.
Guan, C.-H. Lai and
G.W. Wei, Fourier-Bessel analysis of patterns in a
circular
domain, Physica D ,
151 , 83-98 (2001).
(56) G.W.
Wei, Discrete singular convolution for
beam
analysis, Engineering Structures ,
23 , 1045-1053 (2001).
(55) G.W.
Wei, Vibration analysis by discrete singular convolution, J.
Sound Vibration ,
244 , 535-553 (2001).
(54) G.W.
Wei, Synchronization of single-side locally averaged adaptive coupling and
its application to shock
capturing,
Phys. Rev. Lett. ,
86 , 3542-3545
(2001).
(53) G.W.
Wei, A new algorithm for solving some mechanical problems, Comput. Methods Appl.
Mech. Engng., 190,
2017-2030 (2001).
(52) D.C.
Wan and G.W. Wei, The study of
quasi wavelets based numerical method applied to Burgers'
equations, Appl. Math.
Mech-Engl , 21 ,
1099-1110 (2000).
(51) D.C.
Wan and G.W. Wei, Numerical solution of
incompressible
Euler and Navier-Stokes equations by efficient discrete singular convolution method,
Acta Mechanica Sinica,
16 , 223-239 (2000).
(50) G.W.
Wei, Wavelets generated by using
discrete
singular convolution kernels, J.
Phys. A, Mathematical and General,
33 , 8577-8596 (2000).
(49) G.W.
Wei, A unified approach for
the solution of the
Fokker-Planck
equation, J. Phys. A, Mathematical and General
, 33 ,
4935-4953 (2000).
(48) G.W.
Wei, Solving quantum eigenvalue problems by discrete singular convolution,
J. Phys. B ,
33 , 343-352 (2000).
(47) G.W.
Wei, Discrete singular convolution for
the sine-Gordon equation, Physica
D, 137 ,
247-259 (2000).
(46) D.
K. Hoffman, G.
W. Wei, and
D. J. Kouri, A variation approach to
the Dirichlet--Gabor wavelet-distributed approximating functional, J.
Math. Chem., 25,
235-244
(1999).
(45) D.S.
Zhang, G.W. Wei, D.J.Kouri, David
K. Hoffman, Michael Gorman, Antonio Palacios, and
Gemunu H. Gunaratne, Integrating the
Kuramoto-Sivashinsky
equation in polar coordinates:
Application of the distributed approximating functional approach, Phys.
Rev. E., 60 , 3353-3360 (1999).
(44) Zhuoer Shi,
D.J. Kouri, G.W.
Wei, and David K.
Hoffman,
Generalized symmetric interpolating wavelets, Comput. Phys.
Commun., 119, 194-218 (1999).
(43) D.J.
Kouri, D.S. Zhang, G.W.
Wei, and D.K. Hoffman, Numerical solutions of
nonlinear wave equations ,
Phys. Rev. ,
E 59 ,
1274-1277 (1999).
(42) G.W.
Wei,
Generalized
Perona-Malik equation for
Image
Restoration, IEEE Signal Processing Lett., 6, 165-167 (1999).
(41) G.W.
Wei, Discrete singular convolution for
the solution of the
Fokker-Planck
equations, J. Chem.
Phys. , 110 ,
8930-8942 (1999).
(40) G.W.
Wei, Generalized reaction-diffusion equations, Chem.
Phys. Lett . , 303, 531-536 (1999).
(39) S.
Alavi, G.W. Wei and
R.F. Snider, Chain relations of reduced distribution functions and their
associated
correlation functions, J.
Chem. Phys., 108 , 706-714 (1998).
(38) D.S.
Zhang, G.W. Wei, D.J.
Kouri and D.K. Hoffman, Lagrange distributed approximating functional method for
the solution of the
Schrodinger
equation, Chem. Phys.
Lett. , 284 ,
56-62 (1998).
(37) D.K.
Hoffman, G.W. Wei, D.S.
Zhang, and D.J. Kouri, Interpolating distributed approximating functionals, Phys.
Rev. , E 57 , 6152-6160 (1998).
(36) D.K.
Hoffman, G.W. Wei, and
D.J. Kouri, Shannon-Gabor wavelet distributed approximating functional, Chem.
Phys. Lett. ,
287 , 119-124 (1998).
(35) G.W.
Wei, D.S. Zhang, D.J.
Kouri and D.K. Hoffman, Distributed approximating functional approach to
Burgers'
equation in one and two
space
dimensions, Comput. Phys. Commun. , 111 ,
87-92 (1998).
(34) G.W.
Wei, S. Althorpe, D.J.
Kouri and D.K. Hoffman, Lagrange-distributed approximating-functional approach to wave-packet propagation: Application to
the time-independent wave-packet reactant-product decoupling method, Phys.
Rev. A 57
(5) , 3309-3316 (1998).
(33) G.W.
Wei, D.J. Kouri, and
D.K. Hoffman, Wavelets and distributed approximating functionals,
Comput. Phys. Commun. ,
112, 1-6 (1998).
(32) G.W.
Wei, D.S. Zhang, D.J.
Kouri, and D.K. Hoffman, Wavelet-distributed approximating functional method
for solving the Navier-Stokes equation,
Comput. Phys. Commun. ,
115 , 18-24 (1998).
(31) G.W.
Wei, D.S. Zhang, D.J.
Kouri and D.K. Hoffman, A robust and
reliable
approach to nonlinear dynamical problems,
Comput. Phys. Commun., 111,
93-109 (1998).
(30) G.W.
Wei, Quasi wavelets and quasi
interpolating
wavelets, Chem. Phys.
Lett., 296 ,
215-222 (1998).
(29) G.W.
Wei, S. Althorpe, D.J.
Kouri and D.K. Hoffman, An application of distributed approximating functional-wavelets to
reactive
scattering, J. Chem.
Phys., 108 ,
7065-7069 (1998).
(28) G.W.
Wei, D.S. Zhang,
D.J. Kouri and
D.K. Hoffman, Lagrange
distributed approximating functionals,
Phys. Rev. Lett.
,79 , 775-779
(1997).
(27) G.W.
Wei, S. Alavi and
R.F. Snider, Equal reaction rates for
all
recombination pathways, J. Chem. Phys , 106 ,
1463-1466 (1997).
(26) D.S.
Zhang, G.W. Wei, D.J.
Kouri and D.K. Hoffman, Distributed approximating functional approach to
the Fokker-Planck equation: Eigenfunction expansion, J.
Chem. Phys. ,
106 , 5216-5224 (1997).
(25) D.S.
Zhang, G.W. Wei, D.J.
Kouri and D.K. Hoffman, Burgers' equation with high
Reynolds number, Phys.
Fluids , 9 ,
1853-1855 (1997).
(24) D.S.
Zhang, G.W. Wei, D.J.
Kouri and D.K. Hoffman, Numerical method for
the nonlinear Fokker-Planck equation,
Phys. Rev. E 56 , 1197-1206 (1997).
(23) G.W.
Wei, D.S. Zhang, D.J.
Kouri and D.K. Hoffman, Distributed approximating functional approach to
the Fokker-Planck equation: Time propagation,
J. Chem. Phys., 107 , 3239-3246 (1997).
(22) J.G.
Muga, G.W. Wei and
R.F. Snider, Short-time
behaviour of the quantum survival probability,
Europhys. Lett., 35, 247-252 (1996).
(21) J.G.
Muga, G.W. Wei and
R.F. Snider, Survival probability for the
Yamaguchi
potential, Ann. Phys. ,
252 , 336-356 (1996).
(20) R.F.
Snider, G.W. Wei and
J.G. Muga, Moderately dense gas
quantum kinetic theory:
Transport
coefficient expressions, J. Chem.
Phys. , 105 ,
3066-3078 (1996).
(19) R.F.
Snider, G.W. Wei and
J.G. Muga, Moderately dense gas
quantum kinetic theory:
Aspects of pair correlations,
J. Chem. Phys. ,
105 , 3057-3065 (1996).
(18) G.W.
Wei and R.F. Snider, Discrete basis
representation
of Ursell operators,
Phys. Rev. , E 54 , 2414-2418, (1996).
(17) G.W.
Wei and R.
F. Snider, Correlated state
evaluation of the second virial coefficient,
Phys. Rev. A ,
52(4) , 2925-2936 (1995).
(16) G.
Wei and R.
F. Snider, A
pictorial
representation for multispin evolutions, Concepts in
Magn. Reson.
, 7(2) ,
153-163 (1995).
(15) R.
F. Kiefl, J.
W. Schneider, A.
McFarlane, K. Chow,
T. L. Duty,
T. L. Estle,
B. Hitti, R.
L.Lichti, E. J. Ansaldo, C. Schwab, P.
W. Percival, G.
Wei, S. Wlodek, K.
Kojima, W. J. Romanow, J. P. McCauley, Jr, N.
Coustel, J. E. Fischer, and A.
B. Smith, III,
Molecular dynamics of the Muonium-C60 radical in
solid C60, Phys.
Rev. Lett. ,
68 , 2708-2712 (1992).
(14) R.
F. Kiefl, J.
W. Schneider, A.
McFarlane, K. Chow, T.
L. Duty, T.
L. Estle, B.
Hitti, R. L. Lichti, E. J. Ansaldo, C. Schwab, P.
W. Percival, G.
Wei, S. Wlodek, K.
Kojima, W. J. Romanow, J. P. McCauley, Jr, N.
Coustel, J. E. Fischer, and A.
B. Smith, III,
Molecular dynamics of the (Mu+)- C60 radical in
solid C60, Phys.
Rev. Lett. ,
68, 1347-1350 (1992).
(13) F.L.
Jiang, G.W. Wei, Z.Y.
Huang, X.J. Lei, M.C. Hong, B.S. Kang
and H.Q. Liu, Syntheses and crystal structures of
2 thiolato-organophosphino cobalt(II) complexes, (Et4N)[Co(SC6H5)3(PPh3)] and [Co(S-meta- C6H4CH3)2(Ph2PCH2CH2P(Ph)CH2CH2PPh2)], J.
Coord. Chem., 25, 183-191 (1992).
(12) G.W.
Wei, Z.Y. Huang, X.J. Lei, R. Cao, F.L. Jiang, M.C.
Hong, L.R. Huang and H.Q. Liu, Structure of [Bis(2-diphenylphospinoethyl)phenylphospine-P, P, P]
carbonyl-(phenylthiolato)Cobalt(I), [Co(Ph2PCH2CH2P(Ph)CH2CH2PPh2)(SPh)(CO)], ActaCrystallogr. C, 48, 2130-2132 (1992).
(11) G.
Wei, M. Hong, Z.
Huang, and H. Liu, Synthesis and crystal structure of
a platinum(II) complex with mixed
diphosphine and thiolate ligands, Pt(dppm)(SPh)_2, J. Struct. Chem.,
11(5), 334-338 (1992).
(10) M.C.
Hong, Z.Y. Huang, X.J.
Lei, G.W. Wei, B.S.
Kang and H.Q. Liu, Syntheses, properties and X-ray crystal structures of
hexa-nuclear
cobalt chalcogen clusters Co6S8(PPh3)6 and
Co6Se8(PPh3)6.THF,
Polyhedron, 10, 927-934 (1991).
(9) F.L.
Jiang, G.W. Wei, X.J.
Lei, L.R. Huang, M.C.
Hong and H.Q.
Liu,
Synthesis, characterization and polymorphic crystal structures of Bis(para-tolylthiolato)bis(tri-n-butylphosphine)-Nickel(II), J.
Chem. Res. S, 9, 238-239 (1991).
(8) G.W.
Wei, M.C. Hong, Z.Y.
Huang, and H.Q. Liu, Stereochemistry of mixed thiolate and
ditertiary
phosphine cobalt (II) complexes -- Crystal structures of
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