PUBLICATION

Guo-Wei Wei

 

Editorials

 

(28) Topological Deep Learning: An Emerging Paradigm in Data Science, SIAM News, November 22, (2024).

 

(27) Tamar Schlick and Guo-Wei Wei, Machine Learning Tools Advance Biophysics, Biophysical Journal, Volume 123, Issue 17, Pages E1-E3 (2024).

 

(26) Guo-Wei Wei, Jie Wu, Duc Nguyen, and Kelin Xia, Preface Special Issue on Recent Advances in Topological Deep Learning, Foundation of Data Science, 6 (2), i-iii, (2024).

 

(25) KM Merz, Guo-Wei Wei, F Zhu, Cutting-Edge Methodologies in Omics Data Analysis, Journal of Chemical Information and Modeling 64 (13), 4939-4940, (2024).

           

(24) KM Merz, YS Choong, Z Cournia, O Isayev, TA Soares, Guo-Wei Wei, F Zhu, Machine Learning in Materials Science, Journal of Chemical Information and Modeling 64 (10), 3959-3960, (2024).           

           

(23) KM Merz, Guo-Wei Wei, F Zhu, Machine Learning in Bio-cheminformatics, Journal of Chemical Information and Modeling 64 (7), 2125-2128, (2024).

 

(22) Mathematics-assisted Directed Evolution and Protein Engineering, SIAM News, June 6, (2023).

 

(21) Characterizing Musical Sounds with Topological Data Analysis, SIAM News, 56(2), Mach (2023).

 

(20) KJ Naidoo, KM Merz, Guo-Wei Wei, Modeling Reactions from Chemical Theories to Machine Learning, Journal of Chemical Information and Modeling 63 (23), 7273-7273, (2023).

 

(19) KM Merz, Guo-Wei Wei, F Zhu, Harnessing the Power of Large Language Model-Based Chatbots for Scientific Discovery, Journal of Chemical Information and Modeling 63 (17), 5395-5395, (2023).

 

(17) KM Merz, Guo-Wei Wei, F Zhu, Machine learning in bio-cheminformatics, Journal of Chemical Information and Modeling 63 (1), 1-1, (2023).

 

(16) Guo-Wei Wei, TA Soares, H Wahab, F Zhu, Computational Chemistry in Asia, Journal of Chemical Information and Modeling 62 (21), 5035-5037, (2022).

 

(15) Guo-Wei Wei, F Zhu, KM Merz, Editorial on Machine Learning, Journal of Chemical Information and Modeling, 62 (17), 3941-3941, (2022).

 

(14) Guo-Wei Wei, Topological Artificial Intelligence Forecasting of Future Dominant Viral Variants, SIAM News, August 9, (2022).

 

(13) Guo-Wei Wei, TA Soares, H Wahab, R Wang, Computational Chemistry in Asia, Journal of Chemical Information and Modeling 61 (2), 547-547, (2021).

 

(12) KM Merz Jr, G De Fabritiis, Guo-Wei Wei, Generative models for molecular design,  Journal of Chemical Information and Modeling, 60 (12), 5635-5636, (2020).

 

(11) KM Merz Jr, G De Fabritiis, Guo-Wei Wei, JCIM special issue on generative models for molecular design, Journal of Chemical Information and Modeling 60 (3), 1072-1072, (2020).

 

(10) Guo-Wei Wei, Persistent Homology Analysis of Biomolecular Data, SIAM News, 50(10) December, (2017).

 

(9) Guo-Wei Wei, Mathematics at the eve of a historic transition in biology, Computational and Mathematical Biophysics, 5, 138-141, (2017).

 

(7) Mathematical Molecular Bioscience and Biophysics, SIAM News, 49 (7), September (2016).

 

(6) Emil Alexov and  Guo-Wei  Wei, Preface: Special Issue on Modeling Electrostatics in Molecular Biology (MEMB), Communications in Computational Physics 13 (1), i-v, (2013).

 

(5) W Guo, L Udpa, Y Wang, Guo-Wei Wei, S Zhao, Mathematical methods for images and surfaces, International Journal of Biomedical Imaging (2012).

 

(4) Guo-Wei Wei, L Udpa, Y Wang, S Zhao, Mathematical methods for images and surfaces,  International Journal of Biomedical Imaging 2010(1), 918467 (2010).

 

(3) Guo-Wei Wei and Ge Wang, Special issue on recent advances in computational techniques for biomedical imaging, Communications in Numerical Methods in Engineering, 25(6), 581-582 (2009).

 

(2) Guo-Wei Wei and Ge Wang, Call for Papers: Special Issue on ‘Recent Advances in Computational Techniques for Biomedical Imaging, Communications in Numerical Methods in Engineering (CNM),  Numerical Linear Algebra with Applications, 15(1) (2008).

 

(1) Guo-Wei and Ge Wang, Special Issue on ‘Recent Advances in Computational Techniques for Biomedical Imaging’, International Journal for Numerical Methods in Engineering (NME),  International journal for numerical methods in engineering 73 (4), 596-596 (2008).

 

 

PAPERS

 

(371)  Kelin Xia and Guo-Wei Wei, A review of geometric, topological and graph theory apparatuses for the modeling and analysis of biomolecular data (2016) arXiv:1612.01735.

 

(370) Duc Nguyen, Kaifu Gao, Jiahui Chen, Rui Wang, and Guo-Wei Wei, Potentially highly potent drugs for 2019-nCoV, (2020).

 

(369) Kaifu Gao, Duc Nguyen, Rui Wang and Guo-Wei Wei, Machine intelligence design of 2019-nCoV drugs, (2020).

 

(368) Jiahui Chen, Rui Wang and Guo-Wei Wei, Review of the mechanisms of SARS-CoV-2 evolution and transmission, Chemical Science (2022).

 

(367) Yuta Hozumi, Rui Wang, Guo-Wei Wei, CCP: Correlated Clustering and Projection for Dimensionality Reduction, IEEE Transactions on Pattern Analysis and Machine Intelligence, (2022).

 

(366) Jian Liu, Dong Chen, and Guo-Wei Wei, Interaction homotopy and interaction homology, (2023).

 

(365) Jian Liu, Dong Chen, and Guo-Wei Wei, Persistent interaction topology in data analysis, (2024).

 

(364) Sean Cottrell and Guo-Wei Wei, Benchmarking the Topological Analysis of Spatial Transcriptomics, (2024).

 

(363) Faisal Suwayyid and Guo-Wei Wei, Persistent Stanley-Reisner theory, (2025).

 

(362) Xiang Liu, Zhe Su, Yongyi Shi, Yiying Ton, Ge Wang, and Guo-Wei Wei, Manifold Topological Deep Learning for Biomedical Data, (2025).

 

(361) Dong Chen, Bingxu Wang, Shunning Li, Wentao Zhang, Kai Yang, Yongli Song, Guo-Wei Wei, and Feng Pan, Superionic Ionic Conductor Discovery via Multiscale Topological Learning, (2024).

 

(360) Dong Chen, Gengzhuo Liu, Hongyan Du, Junjie Wee, Rui Wang, Jiahui Chen, Jana Shen, and Guo-Wei Wei, Drug resistance revealed by in silico deep mutational scanning and mutation tracker, (2025).

 

(359) Jian Jiang, Lu ke, Long Chen, Bozheng Dou, Yueying Zhu, Yazhou Shi, Huahai Qiu, Bengong Zhang, Tianshou Zhou, and Guo-Wei Wei, Chaotic learning — topology-enabled predictions from unpredictable chaotic systems, (2025).

 

(358) Xingjian Xu, Chunmei Wang, Guo-Wei Wei, and Jiahui Chen, PLD-Tree: Persistent Laplacian Decision Tree for Protein-Protein Binding Free Energy Prediction, (2025).

 

(357) Jian Liu, Li Shen, and Guo-Wei Wei, Persistent Khovanov homology of tangles, (2024).

 

(356) Dong Chen, Jian Jiang, Nicole Hayes, Zhe Su, Guo-Wei Wei, Artificial Intelligence Approaches for Anti-Addiction Drug Discovery, Digital Discovery, (2025).

 

(355) JunJie Wee and Guo-Wei Wei, Rapid response to fast viral evolution using AlphaFold 3-assisted topological deep learning, Virus Evolution, Accepted, (2025).

 

(354) Benjamin Jones and Guo-Wei Wei, Khovanov Laplacian and Khovanov Dirac for Knots and Links, Journal of Physics: Complexity, accepted (2025).

 

(353) Zhe Su, Yiying Tong and Guo-Wei Wei, Topology-preserving Hodge Decomposition in the Eulerian Representation, Beijing Journal of Pure and Applied Mathematics, accepted (2025).

 

(352) Nicole Hayes, Xiaoqi Wei, Hongsong Feng, Ekaterina Merkurjev, Guo-Wei Wei, Persistent Sheaf Laplacian Analysis of Protein Flexibility, The Journal of Physical Chemistry, accepted (2025).

 

(351) Emilee Walden, Jiahui Chen, and Guo-Wei Wei, Dimensionality reduction for k-means clustering of large-scale influenza mutation datasets, Communication in Information and Systems, accepted (2025).

 

(350) Jian Jiang, Chunhuan Zhang, Lu Ke, Yueying Zhu, Nicole, Hayse, Huahai Qiu, Bengong Zhang, Tianshou Zhou, and Guo-Wei Wei, A Review of Imbalanced Data Challenge in Chemistry, Chemical Science, accepted (2025).

 

(349) Mushal Zia, Benjamin Jones, Hongsong Feng, Guo-Wei Wei, Persistent Directed Flag Laplacian (PDFL)-Based Machine Learning for Protein–Ligand Binding Affinity Prediction, Journal of Chemical Theory and Computation, accepted (2025).

 

(348) Hongsong Feng, Jeffrey Y Zhao, Guo-Wei Wei, Multiscale differential geometry learning for protein flexibility analysis, Journal of Computational Chemistry, 46, e70073, (2025).   

 

(347) Dong Chen, Chunlong Chen, and Guo-Wei Wei, Category-Specific Topological Learning of Metal-Organic Frameworks, Journal of Materials Chemistry A, 13, 9292 - 9303 (2025).

 

(346) Ruzhi Song, Fengling Li, Jie Wu, Fengchun Lei and Guo-Wei Wei, Multisacle Jones Polynomial and Persistent Jones Polynomial for Knot Data Analysis, AIMS Mathematics, 10(1), 1463-1487 (2025).

 

(345) Xiaoqi Wei and Guo-Wei Wei, Persistent topological Laplacians --- A survey, Mathematics, 13(2), 208 (2025).

 

(344) Ben Jones and Guo-Wei Wei, Persistent Directed Flag Laplacians, Foundations of Data Science, 7(3) (2025).

 

(343) J. Jiang, L Chen, Y Zhu, Y Shi, H Qiu, B Zhang, T Zhou, GW Wei,  Proteomic Learning of Gamma-Aminobutyric Acid (GABA) Receptor-Mediated Anesthesia, Journal of Chemical Information and Modeling, 65 (7), 3655-3668 (2025).

 

(342) Hongsong Feng, Li Shen, Jian Liu, and Guo-Wei Wei, Mayer homology learning prediction of protein-ligand binding affinities, Journal of Computational Biophysics and Chemistry, 24(2), 253-266 (2025).

 

(341) Xiaoqi Wei and Guo-Wei Wei, Persistent sheaf Laplacians, Foundations of Data Science, 7(2), 446-463 (2025).

 

(340) Saumya Nigam, Elvira Gjelaj, Rui Wang, Guo-Wei Wei, Ping Wang, Machine Learning and Deep Learning Applications in Magnetic Particle Imaging, Journal of Magnetic Resonance Imaging 61(1),42-51 (2025).

 

(339) Jian Jiang, Chunhuan Zhang, Long Chen, Lu Ke, Bozheng Dou, Yueying Zhu, Jie Liu, Huahai Qiu, Hongsong Feng, Bengong Zhang, Guo-Wei Wei, A Review of Transformer Models in Drug Discovery and Beyond, Journal Pharmaceutical Analysis, https://doi.org/10.1016/j.jpha.2024.101081 (2025).

 

(338) Yuta Hozumi and Guo-Wei Wei, Analyzing scRNA-seq data by CCP-assisted UMAP and t-SNE, PLOS One, 19(12), e0311791 (2024).

 

(337) JunJie Wee, Jiahui Chen, and Guo-Wei Wei, Preventing future zoonosis: SARS-CoV-2 mutations enhance human-animal cross-transmission, Computers in Biology and Medicine, 182, 109101 (2024).

 

(336) Zhe Su, Yiying Tong, and Guo-Wei Wei, Hodge decomposition of vector fields in Cartesian grids, SA’24: SIGGRAPH Asia 2024 Conference Papers, Article No.:90, pages 1-10, (2024).   

 

(335) Gokul Bhusal, Ekaterina Merkurjev, and Guo-Wei Wei, Persistent Laplacian-enhanced Algorithm for Scarcely Labeled Data Classification, Machine Learning, 113, 7267-7292 (2024).

 

(334) Nicole Hayes, Ekaterina Merkurjev, and Guo-Wei Wei, Graph-Based Bidirectional Transformer Decision Threshold Adjustment Algorithm for Class-Imbalanced Molecular Data, Journal of Computational Biophysics and Chemistry, 23(10), 1339-1358 (2024).

 

(333) Zhe Su, Yiying Tong and Guo-Wei Wei, Persistent de Rham-Hodge Laplacians in Eulerian representation for manifold topological learning, AIMS Mathematics, 9(10) 27438-27470 (2024).   

 

(332) JunJie Wee and Guo-Wei Wei, Benchmarking AlphaFold3's protein-protein complex accuracy and machine learning prediction reliability for binding free energy changes upon mutation, Journal of Chemical Information and Modeling, 64(16), 6676-6683 (2024).

 

(331) Jian Jiang, Long Chen, Bozheng Dou, Lu Ke, Yueying Zhu, Jie Liu, Bengong Zhang, Tianshou Zhou, and Guo-Wei Wei, Transformer Technology in Molecular Science, WIREs Computational Molecular Science, 14(4) e1725, (2024).

 

(330) Li Shen, Hongsong Feng, Funglian Li, Fundchun Lei, Jie Wu, and Guo-Wei Wei, Knot data analysis using multiscale Gauss link integral, Proceedings of the National Academy of Sciences, 121 (42) e2408431121 (2024).

 

(329) Li Shen, Jian Liu, and Guo-Wei Wei, Persistent Mayer Homology and Persistent Mayer Laplacian, Foundation of Data Science, 6(4), 584-612 (2024).  

 

(328) Faisal Suwayyid and Guo-Wei Wei, Persistent Mayer Dirac, Journal of Physics: Complexity, 5, 045005 (2024).

 

(327) Theodore Papamarkou, Tolga Birdal, Michael Bronstein, Gunnar Carlsson, Justin Curry, Yue Gao, Mustafa Hajij, Roland Kwitt, Pietro Liò, Paolo Di Lorenzo, Vasileios Maroulas, Nina Miolane, Farzana Nasrin, Karthikeyan Natesan Ramamurthy, Bastian Rieck, Simone Scardapane, Michael T Schaub, Petar Veličković, Bei Wang, Yusu Wang, Guo-Wei Wei, Ghada Zamzmi, Position: Topological Deep Learning is the New Frontier for Relational Learning, The International Conference on Machine Learning,  Position: Topological Deep Learning is the New Frontier for Relational Learning (openreview.net) (2024).

 

(326) Dong Chen, Jian Liu and Guo-Wei Wei, Multiscale Topology-enabled Structure-to-Sequence Transformer for Protein-Ligand Interaction Predictions, Nature Machine Intelligence, 6, 799-810 (2024).

 

(325) Sean Cottrell, Yuta Hozumi, and Guo-Wei Wei, K-Nearest-Neighbors Induced Topological PCA for scRNA Sequence Data Analysis, Computers in Biology and Medicine, 175, 108497 (2024).

 

(324) Jiahui Chen, Yongjia Xu, Xin Yang, Zixuan Cang, Weihua Geng, and Guo-Wei Wei, Poisson-Boltzmann based machine learning (PBML) model for electrostatic analysis, Biophysical Journal, 123(17) 2801-28-14 (2024). 

 

(323) Li Shen, Jian Liu, and Guo-Wei Wei, Evolutionary Khovanov homology, AIMS Mathematics, 9(9): 26139-26165 (2024).

 

(322) Zhe Su, Yiying Tong, and Guo-Wei Wei, Hodge decomposition of single cell RNA velocity, Journal of Chemical Information and Modeling, 64, 3558--3568 (2024).

 

(321) Hongsong Feng; Sean Cottrell; Yuta Hozumi; Guo-Wei Wei, Multiscale differential geometry learning of networks with applications to single-cell RNA sequencing data, Computers in Biology and Medicine, 171, 108211 (2024).

 

(320) Yuta Hozumi, Guo-Wei Wei, Analyzing Single Cell RNA Sequencing with Topological Nonnegative Matrix Factorization, Journal of Computational and Applied Mathematics, 445, 115842 (2024). 

 

(319) Jian Liu, Li Shen, and Guo-Wei Wei, ChatGPT for Computational Topology, Foundations of Data Science, 6, 221-250 (2024).

 

(318) Faisal Suwayyid and Guo-Wei Wei, Persistent Dirac of Paths in Digraphs and Hypergraphs, Foundation of Data Science, 6, 124-153 (2024).

 

(317) Emily Ribando-Gros, Rui Wang, Jiahui Chen, Yiying Tong, and Guo-Wei Wei, Combinatorial and Hodge Laplacians: Similarity and difference, SIAM Review, 66 (3), 575-601 (2024).

 

(316) Hongyan Du, Guo-Wei Wei, and Tingjun Hou, Multiscale Topology in Interactomic Network: From Transcriptome to Antiadiction Drug Repurposing, Briefings in Bioinformatics, 25 (2), bbae054 (2024).

 

(315) JunJie Wee, Jiahui Chen, Kelin Xia, and Guo-Wei Wei, Integration of persistent Laplacian and pre-trained transformer for protein solubility changes upon mutation, Computers in Biology and Medicine, 169, 107918 (2024).

 

(314) Sheik Ahmed Ullah, Xin Yang, Ben Jones, Shan Zhao, Weihua Geng, and Guo-Wei Wei, Bridging Eulerian and Lagrangian Poisson-Boltzmann solvers by ESES, Journal of Computational Chemistry, 45, 306-320 (2024).

 

(313) Sean Cottrell, Rui Wang, and Guo-Wei Wei, PLPCA: Persistent Laplacian-enhanced PCA for Microarray Data Analysis, Journal of Chemical Information and Modeling, 64, 7, 2405–2420  (2024).

 

(312) Long Chen, Jian Jiang, Bozheng Dou, Hongsong Feng, Jie Liu, Yueying Zhu, Bengong Zhang, Tianshou Zhou, and Guo-Wei Wei, Machine Learning Study of the Extended Drug-target Interaction Network informed by Pain Related Voltage-Gated Sodium Channels, Pain, 165 (4), 306-320 (2024).

 

(311) Saumya Nigam, Jeotikanta Mohapatra, Ashley V. Makela, Jessi Mercedes Rodriguez, Aixia Sun, Hanaan Hayat, Elizabeth Kenyon, Nathan A. Redman, George Jabin, Bin Gu, Mohamed Ashry, Lorenzo F. Sempere, Jiahui Chen, Guo-Wei Wei, Steven Bolin, Brett Etchebarne, J. Ping Liu, Christopher H. Contag, and Ping Wang,  Shape anisotropy-governed high performance nanomagnetosol for in vivo magnetic particle imaging of lungs, Small, 20 (5) 2305300 (2024).

 

(310)  Yuta Hozumi, Kiyoto, Tanemura, and Guo-Wei Wei, Preprocessing of single cell RNA sequencing data using Correlated Clustering and Projection, Journal of Chemical Information and Modeling, 64, 7, 2829–2838 (2024).

 

(309) Rui Wang, Hongsong Feng, and Guo-Wei Wei, ChatGPT in drug discovery: A case study on anti-cocaine addiction drug development with chatbots, Journal of Chemical Information and Modeling, 63, 22, 7189–7209 (2023).

 

(308) Feng, Hongsong; Wang, Rui; Zhan, Chang-Guo, and Guo-Wei Wei,  Multi-objective Molecular Optimization for Opioid Use Disorder Treatment Using  Generative Network Complex,  Journal of Medicinal Chemistry, 66, 17, 12479–12498 (2023).

 

(307) Yuchi Qiu and Guo-Wei Wei, Artificial intelligence-aided protein engineering: from topological data analysis to deep protein language models, Briefings in Bioinformatics, 24 (5) bbad289 (2023).

 

(306) Jiahui Chen, Daniel R. Woldring, Faqing Huang, Xuefei Huang, and Guo-Wei Wei, Topological deep learning based deep mutational scanning, Computers in Biology and Medicine, 164, 107258 (2023).

 

(305) Dong Chen, Jian Liu, Jie Wu, and Guo-Wei Wei, Persistent hyperdigraph homology and persistent hyperdigraph Laplacians, Foundation of Data Science, 5, 558-588 (2023).

 

(304) Bozheng Dou, Zailiang Zhu, Ekaterina Merkurjev, Lu Ke, Long Chen, Jian Jiang, Yueying Zhu, Jie Liu, Bengong Zhang, and Guo-Wei Wei, Machine Learning methods for Small Data Challenges in Molecular Science, Chemical Reviews, 123, 13, 8736–8780 (2023).

 

(303) Hongsong Feng, Jian Jiang, and Guo-Wei Wei, Machine-learning Repurposing of DrugBank Compounds for Opioid Use Disorder, Computers in Biology and Medicine, 160, 106921 (2023).

 

(302) Li Shen, Hongsong Feng, Yuchi Qiu and Guo-Wei Wei, SVSBI: Sequence-based virtual screening of biomolecular interactions, Communications Biology, 6, 536, (2023). 

 

(301)  Dong Chen, Jian Liu, Jie Wu, Guo-Wei Wei, Feng Pan, and Shing-Tung Yau, Path topology in molecular and materials sciences, The Journal of Physical Chemistry Letters, 14, 954-964, (2023).

 

(300) Hongsong Feng, Rana Elladki, Jian Jiang, and Guo-Wei Wei, Machine-learning Analysis of Opioid Use Disorder Informed by MOR, DOR, KOR, NOR and ZOR-Based Interactome Networks, Computers in Biology and Medicine, 157, 106745 (2023).

 

(299) Hasaan Hayat, Rui Wang, Aixia Sun, Christiane L. Mallett, Saumya Nigam, Nathan Redman, Demarcus Bunn, Elvira Gjelaj, Nazanin Talebloo, Adam Alessio, Anna Moore, Kurt Zinn, Guo-Wei Wei; Jinda Fan, and Ping Wang, Deep learning-enabled quantification of simultaneous PET/MRI for cell transplantation monitoring, iScience, 26,107083 (2023).

 

(298) Zailiang Zhu, Bozheng Dou,Yukang Cao, Jian Jiang, Yueying Zhu, Dong Chen, Hongsong Feng, Jie Liu, Bengong Zhang, Tianshou Zhou, Guo-Wei Wei, TIDAL: Topology-Inferred Drug Addiction Learning, Journal of Chemical Information and Modeling, 63, 5, 1472–1489 (2023).

 

(297) Xiaoqi Wei, Jiehui Chen and Guo-Wei Wei, Persistent topological Laplacian analysis of SARS-Cov-2 variants, Journal of Computational Biophysics and Chemistry,  22, 569-587, (2023).

 

(296) Yao Zhang, Kaifu Gao, Dexin Sui, Tuo Zhang, Peixuan Yu, Yuhan Jiang, Min Su, Guo-Wei Wei, Jian Hu, Structural insights into the elevator-type transport mechanism of a bacterial ZIP metal transporter, Nature Communication, 14(1), 385 (2023).

 

(295) Hongsong Feng and Guo-Wei Wei, Virtual screening of DrugBank database for hERG blockers using topological Laplacian-assisted AI models, Computers in Biology and Medicine, 153, 106491 (2023).

 

(294) Yuchi Qiu and Guo-Wei Wei, Persistent spectral theory-guided protein engineering, Nature Computational Science, 3, 149-163 (2023).

 

(293) Jiahui Chen, Rui Wang, Yuta Hozumi, Gengzhuo Liu, Yuchi Qiu, Xiaoqi Wei and Guo-Wei Wei, Emerging dominant SARS-CoV-2 variants, Journal of Chemical Information and Modeling, 63, 335–342, (2023).

 

(292) Nicole Hayes, Ekaterina Merkurjev, and Guo-Wei Wei, Integrating Transformer and Autoencoder Techniques with Spectral Graph Algorithms for the Prediction of Scarcely Labeled Molecular Data, Computers in Biology and Medicine, 153, 106479 (2023).

 

(291) Ekaterina Merkurjev, Duc Duy Nguyen, and Guo-Wei Wei, Multiscale Laplacian Learning, Applied Intelligence, 53, 15727-15746, (2023).

 

(290) Rui Wang and Guo-Wei Wei, Persistent path Laplacian, Foundations of Data Science, 5, 26-55, (2023).

 

(289) Jiahui Chen, Yuchi Qiu, Rui Wang and Guo-Wei Wei, Persistent Laplacian projected Omicron BA.4 and BA.5 to become new dominating variants, Computers in Biology and Medicine, 151, 106262, (2022).

 

(288) Yuchi Qiu and Guo-Wei Wei, CLADE 2.0: Evolution-driven cluster learning-assisted directed evolution, Journal of Chemical Information and Modeling, 62, 19, 4629–4641 (2022).

 

(287) Jian Liu, Kelin Xia, Jie Wu, Stephen Yau, and Guo-Wei Wei, Biomolecular Topology: modelling and data analysis. Acta Mathematica Sinica, English Series, 38, 1901-1938 (2022).

 

(286) Jiahui Chen and Guo-Wei Wei, Artificial intelligence design of mutation-proof COVID-19 antibody therapies, Communications in Information and Systems, 22 (3), 339-361 (2022).

 

(285) Jiahui Chen and Guo-Wei Wei, Omicron BA.2 (B.1.1.529.2): High potential to becoming the next dominating variant, The Journal of Physical Chemistry Letters, 13, 3840-3849 (2022).

 

(284) Azzam Alfarraj and Guo-Wei Wei, Geometric algebra generation of molecular surfaces, Journal of the Royal Society Interface, 19 (189), 20220117 (2022).

 

(283) Kaifu Gao, Rui Wang, Jiahui Chen, Limei Cheng, Jaclyn Frishcosy, Yuta Huzumi, Yuchi Qiu, Tom Schluckbier, Xiaoqi Wei, and Guo-Wei Wei, Methodology-centered review of molecular modeling, simulation, and prediction of SARS-CoV-2, Chemical Reviews, 122, 13, 11287–11368 (2022).

 

(282) Hongsong Feng, Kaifu Gao, Dong Chen, Li Shen, Alfred J Robison, Edmund Ellsworth and Guo-Wei Wei, Machine learning analysis of cocaine addiction informed by DAT, SERT, and NET-based interactome networks, Journal of Chemical Theory and Computation, 18(4), 2703–2719 (2022).

 

(281) J Grbić, Jie Wu, Kelin Xia, and Guo-Wei Wei, Aspects of topological approaches for data science, Foundation of Data Science, 4(2), 165-216 (2022).

 

(280) Rui Wang, Jiahui Chen, Yuta Hozumi, Changchuan Yin, and Guo-Wei Wei, Emerging vaccine-breakthrough SARS-CoV-2 variants, ACS Infectious Diseases, 8, 3, 546–556 (2022).

 

(279) Jiahui Chen, Rui Wang, Nancy Benovich Gilby, and Guo-Wei Wei, Omicron variant (B.1.1.529): Infectivity, vaccine breakthrough, and antibody resistance, Journal of Chemical Information and Modeling, 62 (2), 412-422 (2022).

 

(278) Limei Cheng, Yuchi Qiu, Brian J. Schmidt, and Guo-Wei Wei, Review of applications and challenges of quantitative systems pharmacology modeling and machine learning for heart failure, Journal of Pharmacokinetics and Pharmacodynamics, 49, 39-50, (2021).

 

(277) Yuchi Qiu, Jian Hu, Guo-Wei Wei, Cluster learning-assisted directed evolution, Nature Computational Science, 1(12), 809-818 (2021).

 

(276) Kaifu Gao, Rui Wang, Jiahui Chen, Jetze Tepe, Faqing Huang, and Guo-Wei Wei, Perspectives of SARS-CoV-2 main protease inhibitors, Journal of Medicinal Chemistry, 64, 16922-16955 (2021).

 

(275) Dong Chen, Jiaxin Zheng, Guo-Wei Wei, and Feng Pan, Extracting Predictive Representations from Hundreds of Millions of Molecules, The Journal of Physical Chemistry Letters, 12, 10793-10801 (2021).

 

(274) Kaifu Gao, Dong Chen, Alfred J. Robison, and Guo-Wei Wei, Proteome-informed machine learning studies of cocaine addiction, The Journal of Physical Chemistry Letters, 12, 11122-11134 (2021).

 

(273) Jiahui Chen, Weihua Geng, and Guo-Wei Wei, MLIMC: Machine learning-based implicit-solvent Monte Carlo, Chinese Journal of Chemical Physics, 34(6) 683-694 (2021).

 

(272) Rui Wang, Jiahui Chen, and Guo-Wei Wei, Mechanisms of SARS-CoV-2 evolution revealing vaccine-resistant mutations in Europe and America, The Journal of Physical Chemistry Letters, 12, 11850-11857 (2021).

 

(271) Qing Zhu, Yuzhe Du, Yoshiko Nomura, Rong Gao, Zixuan Cang, Guo-Wei Wei, Dalia Gordon, Michael Gurevitz, James Groome and Ke Dong, The voltage-sensing module of domain III in an insect sodium channel modulates the action of both α and β toxins, Insect Biochemistry and Molecular Biology, 137, 103625 (2021).

 

(270) Xiaoqi Wei and Guo-Wei Wei, Homotopy continuation for the spectra of persistent Laplacians, Foundations of Data Science, 3(4) 677-700 (2021).

 

(269) Jiahui Chen, Kaifu Gao, Rui Wang, and Guo-Wei Wei, Revealing the threat of emerging SARS-CoV-2 mutations to antibody therapies, Journal of Molecular Biology, 433, 167155 (2021).

 

(268) Rui Wang, Kaifu Gao, Jiahui Chen, and Guo-Wei Wei, Vaccine-escape and fast-growing mutations in the United Kingdom, the United States, Singapore, Spain, South Africa, and other COVID-19-devastated countries, Genomics, 11, 2158-2170 (2021).

 

(267) Dong Chen, Kaifu Gao, Duc D Nguyen, Yi Jiang, Guo-Wei Wei, and Feng Pan, Algebraic Graph-assisted Bidirectional Transformers for Molecular Prediction, Nature Communications, 12, 3527 (2021).

 

(266) Timothy Szocinski; Duc D Nguyen; Guo-Wei Wei, AweGNN: Auto-parametrized weighted element-specific graph neural networks, Computers in Biology and Medicine, 134, 104460 (2021).

 

(265) Jiahui Chen, Kaifu Gao, Rui Wang, and Guo-Wei Wei, Prediction and mitigation of mutation threats to COVID-19 vaccines and antibody therapies, Chemical Science,   12, 6929 - 6948 (2021).

 

(264) Rui Wang, Rundong Zhao, Emily Ribando-Gros, Jiahui Chen, Yiying Tong, and Guo-Wei Wei, HERMES: Persistent spectral graph software, Foundations of Data Science, 3, 67-97 (2021).

 

(263) Yuta Hozumi, Rui Wang, Changchuan Yin, and Guo-Wei Wei, UMAP-assisted K-means clustering of large-scale SARS-CoV-2 mutation datasets, Computers in Biology and Medicine, 131, 104264 (2021).

 

(262) Jasiel O. Strubbe-Rivera, Jiahui Chen, Benjamin A. West, Kristin N. Parent, Guo-Wei Wei, Jason N. Bazil, Modeling the effects of calcium overload on mitochondrial ultrastructural remodeling, Applied Sciences, 11, 2071 (2021).

 

(261) Jian Jiang, Rui Wang and Guo-Wei Wei, GGL-Tox: Geometric graph learning for toxicity prediction, Journal of Chemical Information and Modeling, 61, 1691-1700 (2021).

 

(260) Rui Wang, Jiahui Chen, Kaifu Gao, Yuta Hozumi, Changchuan Yin, and Guo-Wei Wei, Analysis of SARS-CoV-2 mutations in the United States suggests presence of four substrains and novel variants, Communications Biology, 4, 228 (2021).

 

(259) Yi Jiang, Dong Chen, Xin Chen, Guo-Wei Wei and Feng Pan, Topological representations of crystalline compounds for the machine-learning prediction of materials properties, npj Computational Materials, 7(1) 1-8 (2021).

 

(258) Jiahui Chen, Rui Wang, and Guo-Wei Wei, SARS-CoV-2 becoming more infectious as revealed by algebraic topology and deep learning, Communications in Information and Systems, 21(1), 31-36 (2021).

 

(257) Jiahui Chen, Kaifu Gao, Rui Wang, Duc Nguyen, and Guo-Wei Wei, Review of COVID-19 antibody therapies, Annual Review of Biophysics, 50, 1-30 (2021).  ,

 

(256) Jiahui Chen, Rundong Zhao, Yiying Tong and Guo-Wei Wei, Evolutionary de Rham-Hodge method, Discrete and Continuous Dynamical Systems Series B, 26, 3785-3821 (2021). 

 

(255) KM Merz Jr, G De Fabritiis, and GW Wei, Generative models for molecular design, Journal of Chemical Information and Modeling 60 (12), 5635-5636 (2020).

 

(254) Rui Wang, Jiahui Chen, Yuta Hozumi, Changchuan Yin, and Guo-Wei Wei, Decoding Asymptomatic COVID-19 infection and transmission, The Journal of Physical Chemistry Letters, 11, 10007-10015 (2020).

 

(253) Duc Duy Nguyen, Kaifu Gao, Jiahui Chen, Rui Wang, and Guo-Wei Wei, Unveiling the molecular mechanism of SARS-CoV-2 main protease inhibition from 137 crystal structures using algebraic topology and deep learning, Chemical Sciences, 11, 12036 - 12046 (2020).

 

(252) Rui Wang, Yuta Hozumi, Yong-Hui Zheng, Changchuan Yin, and Guo-Wei Wei, Host immune response driving SARS-CoV-2 evolution, Viruses, 12, 1095 (2020).

 

(251) Rui Wang, Yuta Hozumi, Changchuan Yin, Guo-Wei Wei, Mutations on COVID-19 diagnostic targets, Genomics, 112, 5204-5213 (2020).

 

(250) Zixuan Cang, Elizabeth Munch, and Guo-Wei Wei, Evolutionary homology on coupled dynamical systems with applications to protein flexibility analysis, Journal of Applied and Computational Topology, 4, 481-507 (2020).

 

(249) Kaifu Gao, Duc Nguyen, Meihua Tu, and Guo-Wei Wei, Generative network complex for the automated generation of druglike molecules, Journal of Chemical Information and Modeling, 60 5682-5698 (2020).

 

(248) Ruiqiong Guo, Zixuan Cang, Jiaqi Yao, M. Kim, Erin Deans, Guo-Wei Wei, Seung-gu Kang, and Heedeok Hong, Structural cavities are critical to balancing stability and activity of a membrane-integral enzyme.  Proceedings of the National Academy of Sciences, 117 (36), 22146-22156 (2020).

 

(247) Rundong Zhao, Menglun Wang, Jiahui Chen, Yiying Tong and Guo-Wei Wei, The de Rham–Hodge Analysis and Modeling of Biomolecules, Bulletin of Mathematical Biology, 82, 1-38 (2020).

 

(246) Jiahui Chen, Rui Wang, Menglun Wang, and Guo-Wei Wei, Mutations strengthened SARS-CoV-2 infectivity, Journal of Molecular Biology, 432, 5212-5226 (2020). 

 

(245)  K Gao, DD Nguyen, J Chen, R Wang, GW Wei, Repositioning of 8565 existing drugs for COVID-19. The Journal of Physical Chemistry Letters, 11, 13, 5373–5382 (2020).

 

(244) Rui Wang, Yuta Hozumi, Changchuan Yin, and Guo-Wei  Wei,  Decoding SARS-CoV-2 transmission, evolution and ramification on COVID-19 diagnosis, vaccine, and medicine, Journal of Chemical Information and Modeling, 60, 5853-5865 (2020).

 

(243) Rui Wang, Duc D Nguyen and Guo-Wei Wei, Persistent spectral graph, International Journal for Numerical Methods in Biomedical Engineering, 36(9), e3376  (2020).

 

(242) Duc D. Nguyen and Guo-Wei Wei, Math and AI-based Repositioning of Existing Drugs for COVID-19, SIAM News, 53(4) (2020) https://sinews.siam.org/Details-Page/math-and-ai-based-repositioning-of-existing-drugs-for-covid-19

 

(241) Xin Chen, Dong Chen, Mouyi Weng, Yi, Jiang, Guo-Wei Wei and Feng Pan, Topology-Based Machine Learning Strategy for Cluster Structure Prediction, The Journal of Physical Chemistry Letters, 11, 11, 4392–4401 (2020).

 

(240) Zixuan Cang and Guo-Wei Wei, Persistent cohomology for datasets with heterogeneous information, SIAM Journal on Mathematics of Data Science, 2 (2), 396-418 (2020).  

 

(239)  Kaifu Gao, Duc Duy Nguyen, Vishnu Sresht, Alan M. Mathiowetz, Meihua Tu, and  Guo-Wei Wei, Are 2D  fingerprints still valuable for drug discovery? Physical Chemistry Chemical Physics, 2 (16), 8373-8390 (2020).

 

(238) Jian Jiang, Rui Wang, Menglun Wang, Kaifu Gao, Duc D Nguyen and Guo-Wei Wei, Boosting tree-assisted multitask deep learning for small scientific datasets. Journal of Chemical Information and Modeling, 60 (3), 1235-1244 (2020).

 

(237) David Bramer and Guo-Wei Wei, Atom-specific persistent homology and its application to protein flexibility analysis, Computational and Mathematical Biophysics,   8, 1-35 (2020).

 

(236) Duc Nguyen, Zixuan Cang, and Guo-Wei Wei, A review of mathematical representations of biomolecular data, Physical Chemistry Chemical Physics, 22, 4343-4367 (2020).

 

(235) Menglun Wang, Z.  X. Cang, and Guo-Wei Wei,   A topology-based network tree for the prediction of protein-protein binding free energy changes following mutation, Nature Machine Intelligence, 2, 116-123 (2020).

 

(234) Duc Duy Nguyen, Kaifu Gao, Menglun Wang, and Guo-Wei Wei, MathDL: Mathematical deep learning for D3R Grand Challenge 4, Journal of Computer Aided Molecular Design,  34, 131-147 (2020).

 

(233) Limei Cheng, Guo-Wei Wei and Tarek Leil, Review of quantitative systems pharmacological modeling of thrombosis, Communications in Information and Systems, 19, 219-240 (2019).

 

(232) Christopher Grow, Kaifu Gao, Duc D Nguyen and Guo-Wei Wei, Generative network complex (GNC) for drug discovery, Communications in Information and Systems, 19, 241-277 (2019).

 

(231) Rundong Zhao, Mathieu Desbrun, Guo-Wei Wei and Yiying Tong, 3D Hodge Decompositions of Edge- and Face-based Vector Fields, ACM Transactions on Graphics (TOG) 38 (6), 181 (2019).

 

(230) Guo-Wei Wei, Protein structure prediction beyond AlphaFold, Nature Machine Intelligence, Vol. 1, 336-337, (2019).

 

(229) Duc D Nguyen and Guo-Wei Wei, AGL-Score: Algebraic Graph Learning Score for Protein-Ligand Binding Scoring, Ranking, Docking, and Screening, Journal of Chemical Information and Modeling, 59, 3291-3304, (2019).

 

(228) Duc D. Nguyen and Guo-Wei Wei, DG-GL: Differential geometry based geometric learning of molecular datasets, International Journal for Numerical Methods in Biomedical Engineering, 35 (3), e3179 (2019).   

 

(227) Duc Duy Nguyen, Zixuan Cang, Kedi Wu, Menglun Wang, Yin Cao  and Guo-Wei Wei, Mathematical deep learning for pose and binding affinity prediction and ranking in D3R Grand Challenges, Journal of Computer Aided Molecular Design, 33, 71-82   (2019).

 

(226) David Bramer and G. W. Wei, Blind prediction of protein B-factor and flexibility, Journal of Chemical Physics, 149, 134107 (2018).

 

(225) Rundong Zhao, Menglun Wang, Yiying Tong and Guo-Wei Wei, A divide-and-conquer strategy for large-scale Eulerian solvent excluded surface, Communications in Information and Systems, 18, 299-329 (2018).

 

(224) Rundong Zhao, Zixuan Cang, Yiying Tong and Guo-Wei Wei, Protein Pocket Detection via Convex Hull Surface Evolution and Associated Reeb Graph, Bioinformatics, 24 (17), i830-i837 (2018).

 

(223) Kedi Wu, Zhixiong Zhao, Renxiao Wang  and Guo-Wei Wei, TopP–S: Persistent Homology-Based Multi-Task Deep Neural Networks for Simultaneous Predictions of Partition Coefficient and Aqueous Solubility,  Journal of Computational Chemistry,  39, 1444-1454  (2018).  

 

(222) Kedi Wu and Guo-Wei Wei, Quantitative toxicity prediction using topology based multi-task deep neural networks,  Journal of Chemical Information and Modeling,   58, 520-531 (2018).  

 

(221) David Bramer  and G. W. Wei,  Multiscale weighted colored graphs for protein flexibility and rigidity analysis, Journal of Chemical Physics,  148, 054103  (2018). (This  work  was  featured  in  AIP Scilight)

 

(220) Ahmet Erdemir, Peter J. Hunter, Gerhard A. Holzapfel, Leslie M. Loew, John Middleton, Christopher R. Jacobs, Perumal Nithiarasu, Rainlad Löhner, Guowei Wei , Beth A. Winkelstein, Victor H. Barocas , Farshid Guilak , Joy P. Ku, Jennifer L. Hicks , Scott L. Delp, Michael Sacks , Jeffrey A. Weiss , Gerard A. Ateshian, Steven A. Maas, and Andrew D. McCulloch,  Perspectives on Sharing Models and Related Resources in Computational Biomechanics Research, Journal of Biomechanical Engineering, 140, 024701, (2018). 

 

(219) Z. X. Cang, Lin Mu and Guo-Wei Wei, Representability of algebraic topology for biomolecules in machine learning based scoring and virtual screening, PLOS Computational Biology,  14(1), e100592 (2018).

 

(218) Yuri A. Nedialkov, Kristopher Opron, Hailey L. Caudill1, Fadi Assaf, Amanda J. Anderson, Robert I. Cukier, Guo-Wei Wei and Zachary F. Burton,  Hinge action versus grip in translocation by RNA polymerase, Transcription, 9,1-16 (2018)

 

(217) Elizabeth Jurrus, Dave Engel, Keith Star, Kyle Monson, Juan Brandi, Lisa E Felberg, David H Brookes, Leighton Wilson, Jiahui Chen, Karina Liles, Minju Chun, Peter Li, Todd Dolinsky, Robert Konecny, David R Koes, Jens Erik Nielsen, Teresa Head-Gordon, Weihua Geng, Robert Krasny, Guo-Wei Wei, Michael J Holst, J Andrew McCammon, and Nathan A Baker,  Improvements to the APBS biomolecular solvation software suite,  Protein Science, 27, 112-128 (2018)

 

(216) Bao Wang, Chengzhang Wang, Kedi Wu and Guo-Wei Wei, Breaking the polar-nonpolar division in solvation free energy prediction, Journal of Computational Chemistry, 39, 217–232 (2018).

 

(215) Z. X. Cang and Guo-Wei Wei, Integration of element specific persistent homology and machine learning for protein-ligand binding affinity prediction, International Journal for Numerical Methods in Biomedical Engineering, 34 (2), e2914  (2018).

 

(214)  Guo-Wei Wei, Mathematics at the eve of a historic transition in biology, Molecular Based Mathematical Biology, 5, 138-141 (2017).

 

(213) Guo-Wei Wei, Persistent homology analysis of biomolecular data, SIAM News, 50 (10) December (2017).

 

(212) Z. X. Cang and Guo-Wei Wei, TopologyNet: Topology based deep convolutional and multi-task neural networks for biomolecular property predictions

, PLOS Computational Biology, 13(7), e1005690 (2017).

 

(211) Z. X. Cang and Guo-Wei Wei, Element specific persistent homology for the analysis and prediction of protein folding stability upon mutation, Bioinformatics,   33, 3549-3557 (2017).

 

(210) Duc D Nguyen, Tian Xiao, Menglun Wang  and Guo-Wei Wei, Rigidity strengthening: A  mechanism for protein-ligand binding,  Journal of Chemical Information and Modeling, 57, 1715-1721 (2017).

 

(209) Bao Wang, Zhixiong Zhao, Duc Nguyen and Guo-Wei Wei, Feature functional theory - binding predictor (FFT-BP) for the blind prediction of binding free energy, Theoretical Chemistry Account, 136, 55 (2017).

 

(208) Yin Cao, Bao Wang, Kelin Xia and Guo-Wei Wei, Finite volume formulation of the MIB method for elliptic interface problems, Journal of Computational and Applied Mathematics, 321, 60-77 (2017).

 

(207) Duc D Nguyen, Bao Wang and Guo-Wei Wei, Accurate,  robust and  reliable  calculations of Poisson-Boltzmann binding energies,  Journal of Computational Chemistry, 38,  941-948 (2017).

 

(206) Duan Chen and Guo-Wei Wei, A Review of Mathematical Modeling, Simulation and Analysis of Membrane Channel Charge Transport, Reference Module in Life Sciences, https://doi.org/10.1016/B978-0-12-809633-8.12044-8 (2017).

 

(205) Yongcheng Zhou and Guo-Wei Wei, Variational Methods for Biomolecular Modeling, in Variational Methods in Molecular Modeling, Edited by Jianzhong Wu, Springer Science+Business Media Singapore, 181-221, (2017).

 

(204) Beibei Liu, Bao Wang, Rundong Zhao, Yiying Tong and Guo-Wei Wei, ESES:  software for Eulerian solvent excluded surface, Journal of Computational Chemistry, 38, 446-466 (2017).

 

(203) Lin Mu, Kelin Xia and Guo-Wei Wei, Geometric and electrostatic modeling using molecular rigidity functions, Journal of Computational and Applied Mathematics, 313, 18-37 (2017).

 

(202) Duc D Nguyen and Guo-Wei Wei, The impact of surface area, volume, curvature and Lennard-Jones potential to solvation modeling, Journal of Computational Chemistry,  38, 24–36 (2017).

(201) Guo-Wei Wei and  Nathan A. Baker, Differential geometry-based solvation and electrolyte transport models for biomolecular modeling: A review. In Many-Body Effects and Electrostatics in Biomolecules, edited by Qiang Cui, Markus Meuwly, and Pengyu Ren, Pan Stanford, 417-464, (2016).

 

(200) Guo-Wei Wei, Mathematical Molecular Bioscience and Biophysics, SIAM News,  49 (7), (2016).

 

(199) Bao Wang, Zhixiong Zhao and Guo-Wei Wei, Automatic parametrization of non-polar implicit solvent models for the blind prediction of solvation free energies, Journal of Chemical Physics, 145, 124110 (2016).

 

(198) Duc D Nguyen, Kelin Xia and Guo-Wei Wei,  Generalized flexibility-rigidity index, Journal of Chemical Physics, 144, 234106 (2016).

 

(197) Kristopher Opron, Kelin Xia, Zachary F.  Burton and Guo-Wei Wei, Flexibility-Rigidity Index  for Protein-Nucleic Acid Flexibility and Fluctuation Analysis, Journal of Computational Chemistry,  37, 1283–1295 (2016).

 

(196) Zachary F. Burton, Kristopher Opron, Guowei Wei and  James H. Geiger, A model for genesis of transcription systems,   Transcription,  7, 1-13 (2016).

 

(195) Bao Wang and   Guo-Wei Wei,  Object-oriented persistent homology,  Journal of Computational Physics, 305, 276-299 (2016).

 

(194) Zixuan Cang, Lin Mu, Kedi Wu, Kris Opron, Kelin Xia and Guo-Wei Wei, A topological approach to protein classification, Molecular based Mathematical Biology, 3, 140-162 (2015)   

 

(193) Kelin Xia, Kristopher Opron and Guo-Wei Wei, Multiscale Gaussian network model (mGNM) and multiscale anisotropic network model (mANM), Journal of Chemical Physics, 143, 204106   (2015).

 

(192) Bao Wang and   Guo-Wei Wei, Parameter optimization in differential geometry based solvation models, Journal of Chemical Physics,  143, 134119 (2015).

 

(191) Kelin  Xia, Zhixiong Zhao   and    Guo-Wei Wei,  Multiresolution persistent homology for excessively large biomolecular datasets, Journal of Chemical Physics, 143, 134103 (2015).

 

(190) Kristopher Opron, Kelin Xia, and Guo-Wei Wei, Communication: Capturing protein multiscale thermal fluctuations, Journal of Chemical Physics, 142,   211101 (2015).

 

(189) Jinkyoung Park, Kelin Xia and G.W. Wei,  Atomic scale design and three-dimensional simulations of nanofluidic systems, Microfluidics and Nanofluidics,  19, 665-692 (2015).

 

(188) Kelin  Xia   and    Guo-Wei Wei,  Multidimensional persistence in  biomolecular data,   Journal of Computational Chemistry, 36, 1502-1520 (2015).

 

(187) Kelin  Xia, Zhixiong Zhao  and   Guo-Wei Wei,  Multiresolution topological simplification, Journal of Computational Biology, 22, 9, 1-5 (2015).

 

(186) Bao Wang, Kelin  Xia and   Guo-Wei  Wei,  Matched interface and boundary method for  3D elastic interface problems,  Journal  of  Computational  Physics,  294, 405-438  (2015).

 

(185) Kelin  Xia   and    Guo-Wei    Wei,  Persistent topology for cryo-EM data analysis,    International  Journal  for  Numerical    Methods  in    Biomedical    Engineering,  31, e02719 (2015).

 

(184)  Langhua    Hu,  Duan  Chen  and  Guo-Wei  Wei,    Geometric    and    phonon  effects    on    nano    transistors,  Journal  of    Computational  Physics,  290, 169-187  (2015).

 

(183) Bao Wang, Kelin  Xia and   Guo-Wei  Wei,  Matched interface and boundary method for irregular elastic interface problems, Journal of Computational and Applied Mathematics, 285, 203-225 (2015).

 

(182) Kelin  Xia, X.  Feng,  Yiying  Tong  and    Guo-Wei    Wei,  Persistent homology for the quantitative prediction of fullerene stability, Journal of Computational Chemistry, 36, 408-422 (2015).

 

(181) Langhua    Hu,  Siyang Yang and  Guo-Wei  Wei,    Simulation of inviscid compressible flows using PDE transform.   Commun. Comput. Phys., 16, 1201-1238  (2014).

 

(180) Kelin  Xia and   Guo-Wei  Wei,  A  Galerkin formulation of the MIB method for three dimensional elliptic interface problems,  Computers and Mathematics with Applications, 68, 719–745, (2014).

 

(179)   Kelin  Xia,    Meng  Zhan,    and    Guo-Wei   Wei,  MIB  Galerkin  method  for  elliptic  interface  problems,  Journal of Computational and Applied Mathematics,  272. 195-220 (2014).

 

(178) Kelin  Xia   and    Guo-Wei    Wei,  Persistent homology  analysis of protein structure, flexibility and folding,    International  Journal  for  Numerical    Methods  in    Biomedical    Engineering, 30, 814-844 (2014).

 

(177) Kristopher Opron, Kelin Xia, and Guo-Wei Wei, Fast and anisotropic flexibility-rigidity index for protein flexibility and fluctuation analysis, Journal of Chemical Physics, 140(23), 234105, (2014).

 

(176) Kelin Xia and Guo-Wei Wei, Molecular nonlinear dynamics and protein thermal uncertainty quantification, Chaos, 24, 013103 (2014).

 

(175) Shan    Zhao  and  Guo-Wei    Wei,    A  unified    discontinuous    Galerkin    framework  for    time    integration, Mathematical Methods in the Applied Sciences,  37, 1042-1071 (2014).

 

(174)  Kelin  Xia,  Xin  Feng,  Zhan Chen, Yiying  Tong  and    Guo-Wei    Wei,  Multiscale  geometric modeling of macromolecules I:  Cartesian representation, Journal of Computational Physics, 257, 912-936 (2014).

 

(173)  Kelin Xia, and Guo-Wei Wei, A stochastic model for protein flexibility analysis, Physical Review E, 88, 062709 (2013).

 

(172) X.  Feng,  Kelin  Xia, Zhan Chen, Yiying  Tong  and    Guo-Wei    Wei, Multiscale  geometric modeling of macromolecules II: Lagrangian representation, Journal of Computational Chemistry,  34, 2100-2120  (2013).

 

(171) Kelin Xia, Kristopher Opron and Guo-Wei Wei, Multiscale multiphysics and multidomain models — Flexibility and rigidity, Journal of Chemical Physics,  139, 194109  (2013).

 

(170)  L.  Mu,  J. P. Wang,  G. W.  Wei,  X. Ye  and  S. Zhao,  Weak  Galerkin  methods  for  second  order  elliptic  interface  problems,  Journal of Computational Physics, 250, 106-125 (2013).

 

(169)  Michael Daily, Jaehun Chun, Alejandro Heredia-Langner, Guo-Wei Wei, and Nathan Baker,  Origin of parameter degeneracy and molecular shape relationships in geometric-flow calculations of solvation free energies. Journal of Chemical Physics, 139, 204108 (2013).

 

(168) Guo-Wei Wei, Multiscale multiphysics and multidomain models I: Basic theory, Journal of Theoretical and Computational Chemistry, 12(8), 1341006 (2013)

 

(167) Jinkyoung Park and G.W. Wei,  A molecular level  prototype for  mechanoelectrical  transducers in  mammalian   hair cells, Journal of Computational Neuroscience, 35, 231-241, (2013).

 

(166)  Dennis G. Thomas, Jaehun  Chun, Zhan Chen, Guo-Wei Wei, Nathan A. Baker,  Parameterization  of a geometric flow implicit solvation  model,  Journal of Computational  Chemistry, 24, 687-695  (2013)

 

(165)  Emil Alexov and Guo-Wei Wei, Preface: Special issue on modeling  electrostatics in molecular biology (MEMB), Commun. Comput. Phys., 13(1) 1-5, (2013).

 

(164) Duan  Chen  and  Guo-Wei  Wei,    Quantum    dynamics    in    continuum    models  for  proton    transport  I:  Basic  formulation,    Communication  in  Computational  Physics,  13,  285-324 (2013) 

 

(163)  Langhua    Hu,  Duan  Chen  and  Guo-Wei  Wei,    High-order  fractional  partial  differential equations for molecular surface  construction, Molecular  Based  Mathematical  Biology,  1-25  (2012).

 

(162) X.  Feng,  Kelin  Xia,  Yiying  Tong  and    Guo-Wei    Wei,  Geometric  modeling  of  organelles,  subcellular  structures   and  multiprotein  complexes,  International  Journal  for  Numerical    Methods  in    Biomedical    Engineering, 28, 1198-1223 (2012).

 

(161)  Zhan  Chen,    Shan    Zhao,  Jaehun  Chun, Dennis G. Thomas, Nathan    Baker,  Peter    Bates  and  Guo-Wei    Wei,  Variational  approach    for    nonpolar    solvation    analysis, Journal of Chemical Physics,  137, 084101 (2012).

(160) Anita T.  Layton  and  Guo-Wei Wei,   Editorials:  Interface  methods  for  biological  and  biomedical  problems,  International  Journal  for  Numerical    Methods  in    Biomedical    Engineering, 28, 289–290, (2012)

(159)  Duan  Chen  and  Guo-Wei    Wei,    Quantum    dynamics    in    continuum    models    for    proton    transport  ---    Generalized  correlation, Journal of Chemical Physics,  136,  134109  (2012)

 

(158)  Guo-Wei    Wei,    Qiong  Zheng,    Zhan  Chen,  and Kelin   Xia, Variational    multiscale    models  for  charge  transport, SIAM Review. 54(4), 699-754 (2012).

 

(157)  Yang  Wang,    Guo-Wei    Wei    and    Siyang    Yang,    Selective    extraction  of  entangled  textures  via    adaptive  PDE  transform,    Int.      J.    Biomed      Imaging,    Volume 2012 (2012), Article ID 958142 (2012).

 

(156)  Langhua    Hu    and  Guo-Wei    Wei,    Nonlinear    Poisson    equation    for  heterogeneous  media.    Biophysical Journal,  103, 758–766 (2012).

 

(155)  Duan  Chen,    Zhan    Chen    and  Guo-Wei    Wei,    Quantum    dynamics    in    continuum    models    for    proton    transport    II:    Variational    solvent-solute      interface,    International  Journal  for  Numerical    Methods  in  Biomedical  Engineering,   28, 25-51 (2012)

 

(154)  Qiong  Zheng,    Siyang    Yang  and  Guo-Wei    Wei,    Molecular    surface    generation    using    PDE  transform.    International  Journal  for  Numerical    Methods  in    Biomedical    Engineering,    28, 291-316      (2012)

 

(153) Yang  Wang,    Guo-Wei    Wei    and    Siyang    Yang,    Model    decomposing  evolution    equations,  Journal  of  Scientific    Computing,    50, 495-518 (2012).

 

(152)  Yang    Wang,    Guo-Wei    Wei    and    Siyang  Yang,  Empirical  model  decomposition    using    local  spectral    evolution    kernels,    Journal  of  Scientific  Computing,   50, 629-664   (2012).

 

(151)   Kelin  Xia,    Meng  Zhan,    Decheng    Wan  and    Guo-Wei    Wei,    Adaptively  deformed  mesh  based    matched    interface    and    boundary    (MIB)    method    for    elliptic  interface  problems,  Journal  of    Computational  Physics, 231, 1440–1461 (2012).

 

(150)  Zhan    Chen    and  G.  W.    Wei,    Differential    geometry    based    salvation    model    III:    Quantum    formulation,    Journal  of    Chemical    Physics, 135, 194108 (2011).

 

(149)  Qiong  Zheng    and  Guo-Wei    Wei,    Poisson-Boltzmann-Nernst-Planck      model.    Journal  of    Chemical    Physics,  134  (19),  194101,    (2011)    (It    was    the  most  downloaded  in  JCP  in  May    2011)

 

(148)    Kelin  Xia,    Meng  Zhan  and    Guo-Wei    Wei,    The    matched    interface    and    boundary    (MIB)  method      for    multi-domain    elliptic  interface    problems.    Journal  of    Computational    Physics,    230,  8231–8258  (2011)

 

(147)  Yang  Wang,    Guo-Wei    Wei    and    Siyang    Yang,  Partial  differential  equation  transform  ---  variational  formulation  and  Fourier  analysis  ,    International  Journal  for      Numerical    Methods  in  Biomedical    Engineering,   27,   1996-2020,  (2011).

 

 (146)  Qiong  Zheng,    Duan    Chen  and  Guo-Wei    Wei,    Second-order    Poisson-Nernst-Planck    solver    for    ion    transport.  Journal  of    Computational    Physics,  230,  5239-5262  (2011)

 

  (145)  Zhan    Chen,    Nathan    Baker    and  G.  W.    Wei,    Differential    geometry    based    salvation    model    II:    Lagrangian    formulation  (62  pages),    Journal    of    Mathematical    Biology,      63,  1139–1200,    (2011).

 

(144)  Weihua  Geng    and  G.W.  Wei,    Multiscale      molecular    dynamics    via    the    matched    interface    and    boundary    (MIB)    method,      Journal  of    Computational    Physics,    230,  435-457      (2011). 

     

(143)  Duan  Chen,    Zhan    Chen,  Changjun    Chen,  Weihua    Geng  and  Guo-Wei    Wei,    MIBPB:  A  software  package  for    electrostatic    analysis,    Journal  of    Computational    Chemistry,    32,  756–770    (2011). 

 

(142)  G.  W.    Wei,  Lalita  Udpa,  Yang  Wang  and  Shan  Zhao,  Editorial:  Mathematical    methods    for    images    and  surfaces,      International      Journal  of    Biomedical    Imaging,    Volume  2010,  Article  ID  918467,  3  pages  (2010).

 

(141)  Zhan    Chen,    Nathan    Baker    and  G.  W.    Wei,    Differential    geometry    based  solvation  model      I:    Eulerian    formulation,  Journal  of    Computational    Physics,  229,    8231-8258  (2010).

 

(140)  Duan  Chen  and  Guo-Wei    Wei,        Modeling    and    simulation    of    nano-electronic  devices,      Journal  of    Computational    Physics,    229,  4431-4460,    (2010).

 

(139)  Changjun  Chen,    Rishu  Saxena,  and  Guo-Wei  Wei,    Differential    geometry    based    multiscale    model    for    virus  capsid    dynamics,    Int.      J.    Biomed    Imaging,    Volume  2010,  Article  ID  308627,  9  pages  (2010).

 

(138)  Guo-Wei,  Wei,        Differential    geometry    based    multiscale      models,    Bulletin      of      Mathematical      Biology,    volume  72,  1562-1622,    (2010).

 

(137)  C.H.W.  Ng,    Y.B.  Zhao,  Y.    Xiang  and  G.W.  Wei,  On    the  accuracy    and    stability  of    a    few    differential    quadrature    formulations  for  the    vibration  analysis    of  beams,  Int.  J.    Engng.    Applied      Sci.  1  (4),  1-25    (2009). 

 

(136)  G.W.  Wei  and  G.  Wang,    Editorial:    Special  issue  on  recent  advances  in    computational  techniques  for  biomedical    imaging,    Commun.  Numer.  Methods  Engng,  25,  581-582  (2009)

 

(135)  P.  Bates,  Z.  Chen,  Y.H.  Sun,  G.W.  Wei  and  S.  Zhao,    Geometric  and  potential    driving      formation  and  evolution    of    biomolecular  surfaces,  J.  Math.  Biol.  59,  193-231  (2009) 

 

(134)  Shan  Zhao  and  G.W.  Wei,  Matched    interface  and  boundary  (MIB)  for  the    implementation  of  boundary  conditions  in    high  order  central  finite  differences,    Int.    J.  Numer.  Meth.  Engng.    77,  1690-1730      (2009)

 

(133)  Duan  Chen,  G.W.  Wei,  X.  Cong  and  Ge  Wang,    Computational  methods  for  optical    molecular    imaging,  Commun.  Numer.  Methods  Engng,    25,  1137-1161(2008).

 

(132)  S.N.  Yu,    Y.      Xiang  and  G.W.  Wei,      Matched  interface  and  boundary  (MIB)  method  for  the  vibration  analysis  of  plates,  Commun.  Numer.  Methods  Engng,  25,  923-950    (2009).

 

(131)  S.N.  Yu  and  G.W.  Wei,  Three    dimensional  matched  interface  and    boundary  (MIB)  method  for  geometric    singularities,  J.  Comput.  Phys.  227,  602-632  (2007). 

 

(130)  W.H.  Geng,  S.N.  Yu  and  G.W.  Wei,  Treatment  of    charge    singularities    in  implicit  solvent    models,    J.    Chem.  Phys.,  127,  114106  (20  pages)    (2007).  Also  available  at  the  Virtual  Journal  of  Biological  Physics  Research    October  1,  2007

 

(129)  P.  Bates,  G.W.  Wei  and  S.  Zhao,  Minimal    molecular    surfaces    and    their    applications,    J.    Comput.  Chem.,  29,  380-391  (2008).   

 

(128)  S.  N.  Yu,  W.  H.  Geng  and  G.W.  Wei,  Treatment  of  geometric  singularities  in  implicit  solvent  models,    J.    Chem.  Phys.,  126,  244108  (13  pages)  (2007).  Also  available  at    the    Virtual  Journal  of  Biological  Physics  Research    July  1,  2007.

 

(127)  Y.C.  Zhou,  M.    Feig  and  G.W.  Wei,    Highly    accurate    biomolecular    electrostatics  in  continuum  dielectric    environments,    J.  Comput.  Chem.  29,  87-97    (2008).

 

(126)  G.W.  Wei  and  S.  Zhao,    On    the    validity  of  ``A  proof    that    the    discrete    singular    convolution    (DSC)/Langrange-distributed  approximation    function    (LDAF)    method    is    inferior  to    high  order    finite    differences  '',        J.  Comput.  Phys.,  226,  2389-2392  (2007).

 

(125)  S.  N.  Yu,  Y.  C.  Zhou  and  G.  W.  Wei,    Matched    interface    and    boundary    (MIB)    method  for    elliptic    problems    with  sharp-edged    interfaces,  J.  Comput.  Phys.  224,  729-756  (2007).

 

(124)  G.W.  Wei,  Editoral:  Recent  advances  in  mathematical  methods  for  the  analysis  of  biomedical  image,  International  Journal  of    Biomedical    Imaging,  vol.  2006,  70578,  1,  (2006).

 

(123)  S.F.  Shieh,    Y.Q.  Wang  ,    G.W.  Wei  and  C.-H.  Lai,  Mathematical    analysis    of    the    wavelet    method  of    chaos    control,    J.  Math.  Phys.,  47,  082701  (2006). 

 

(122)  Y.C.  Zhou  and  G.W.  Wei,  On  the    fictitious-domain    and    interpolation    formulations    of    the    matched      interface    and    boundary  (MIB)    method,    J.  Comput.  Phys.    219,  228-246    (2006). 

 

(121)    Ge  Wang,  Haiou  Shen  Wenxiang  Cong,  Shan  Zhao  and  G.W.  Wei,  Temperature    modulated    bioluminescence    tomography,  Optics  Express,    14  (17)    7852-7871  (2006).

 

(120)    L.  Zhang,  Y.    Xiang  and  G.W.    Wei,  Local    adaptive    differential    quadrature    for    free    vibration    analysis  of    cylindrical    shells    with    various    boundary  conditions,      International  Journal  of  Mechanical  Sciences,  48,  1126-1138  (2006).

 

(119)  Y.H.  Sun,  P.R.  Wu,  G.W.  Wei  and  G.  Wang,  Evolution    operator    based    single-step    method    for    image    processing,  Int.  J.  Biomed.  Imaging,  83847,  1-27  (2006). 

 

(118)  Y.H.  Sun,  Y.C.  Zhou,  S.  G.  Li  and  G.W.  Wei,  A  windowed    Fourier    spectral    scheme  for    hyperbolic    conservation    laws,    J.  Comput.  Phys.  ,    214,  466-490    (2006). 

 

(117)  Y.C.  Zhou,  S.  Zhao,  M.  Feig    and  G.  W.  Wei,      High    order    matched    interface    and    boundary  (MIB)    schemes    for    elliptic    equations    with    discontinuous  coefficients  and    singular    sources,    J.  Comput.  Phys.  ,    213,    1-30,    (2006). 

 

(116)    C.W.  Lim,  Z.R.  Li,  Y.    Xiang,  G.W.  Wei  and  C.M.  Wang,  On  the  missing  modes  when  using    the    exact    frequency    relationship  between    Kirchhoff  and  Mindlin  plates,    Advances  in  Vibration  Engineering,  4,  221-248,  (2005). 

 

(115)  Y.-C.  Lai,  Z.  Liu,  G.-W.  Wei,  C.  H.  Lai,      Reply  to  ``Comment  on  `Shadowability  of    statistical    averages    in    chaotic    systems''',      Physical  Review  Letters,  94,  219403  (2005). 

 

(114)    S.G.  Guan,  C.H.    Lai  and    G.W.  Wei,    Phase  synchronization  between    two    essentially    different  chaotic  systems,    Phys.  Rev.  E  ,    72,    016205  (2005). 

 

(113)    S.G.  Guan,  C.H.    Lai  and    G.W.  Wei,  Bistable    chaos  without    symmetry    in    generalized    synchronization,    Phys.  Rev.  E  ,    71,    036209  (2005). 

 

(112)  S.N.  Yu,  S.  Zhao    and  G.W.  Wei,    Local  spectral    time    splitting    method    for    first    and    second    order    partial  differential    equations,    J.    Comput.    Phys.,  206,  727-780  (2005). 

 

(111)  S.  Zhao,  G.W.  Wei  and    Y.    Xiang,    DSC  analysis  of  free-edged  beams    by  an    iteratively  matched  boundary  method,    J.  Sound  Vibr.,  284,  487-493  (2005). 

 

(110)  S.  Zhao  and  G.W.  Wei,  Option  valuation  by  using  discrete  singular  convolution,    Appl.  Math.  Comput.,    167,  383-418    (2005). 

 

(109)  C.W.  Lim,  Z.R.  Li  and  G.W.  Wei,  DSC-Ritz  method  for  the  high  frequency  mode  analysis  of  thick  shallow  shells,    Int.    J.  Numer.  Meth.  Engng.,    62,    205-232  (2005). 

 

(108)  Y.S.  Hou,  G.W.  Wei  and  Y.  Xiang,  DSC-Ritz  method  for  the  vibration  analysis  of  Mindlin    plates,    Int.    J.    Numer.    Meth.    Engng.,    62,    262-288  (2005). 

 

(107)  S.  Zhao  and  G.W.  Wei,  Tensor  product  derivative    matching    for  wave  propagation  in  inhomogeneous  media,  Microwave  Optical  Techn.  Lett.,    43(1),  69-77  (2004). 

 

(106)  S.  Guan,  G.W.  Wei  and  C.H.  Lai,  Controllability  of  flow  turbulence,    Phys.  Rev.  E,  69,  066214    (2004). 

 

(105)  S.  Zhao  and  G.W.  Wei,  High  order  FDTD  methods  via  derivative    matching  for  Maxwell's  equations  with  material    interfaces,  J.    Comput.    Phys.,      200,    60-103,    (2004). 

 

(104)  C.H.W.  Ng,  Y.B.  Zhao  and  G.W.  Wei,  Comparison  of  the  DSC  and  GDQ  methods  for  the  vibration  analysis  of  plates,  Comput.    Methods  Appl.    Mech.  Engng.,    193,    2483-2506  (2004). 

 

(103)  G.  Bao,  G.W.  Wei,  and  S.  Zhao,  Numerical  solution  of  the  Helmholtz  equation  with  high  wave  numbers,    Int.    J.    Numer.    Meth.  Engng.,    59,    389-408  (2004). 

 

(102)  Y.    Xiang    and  G.W.  Wei,  Exact  solution  for  buckling  and  vibration  of  stepped  rectangular  Mindlin    plates,    Int.  J.    Solid    Struct.  ,    41,    279-294    (2004). 

 

(101)  M.  Zhan,  X.  Wang,    X.  Gong,    G.W.  Wei,  and  C.-H.    Lai,  Complete  synchronization  and  generalized    synchronization  of  one  -way  coupled  time-delayed  systems,  Phys.  Rev.  E,    68,  036208  (2003). 

 

(100)  S.  Guan,  C.-H.  Lai  and  G.W.  Wei,  A  new  wavelet  method  for  characterizing  turbulence,    Comput.  Phys.    Commun.    155,  77-91  (2003). 

 

(99)  Ying  Wang,  Y.B.  Zhao  and  G.W.  Wei,  A  note  on  the    numerical    solution    of  high-order  differential  equations,    J.  Comput.  Appl.    Math.,  159,  387-398  (2003).

 

(98)  W.Z.    Bao,    F.F.  Sun  and  G.W.    Wei,  Numerical  methods  for  the  generalized  Zakharov  system,    J.    Comput.  Phys.,  190,    201-228  (2003). 

 

(97)  Z.H.  Shao  ,    G.W.  Wei  and    S.    Zhao,  DSC  time-domain  solution  of  Maxwell's  equations,    J.    Comput.  Phys.,  189,    427-453  (2003). 

 

(96)  Y.C.  Zhou  and  G.W.  Wei,  High-resolution  conjugate    filters    for  the  simulation  of  flows,    J.  Comput.  Phys.,  189,  150-179  (2003). 

 

(95)  S.  Zhao  and  G.W.  Wei,  Comparison  of  the  discrete  singular  convolution  and  three  other  numerical  schemes  for  Fisher's  equation,    SIAM  J.    Sci.    Comput.,25,  127-147  (2003). 

 

(94)  G.    Bao,  G.W.  Wei  and  S.  Zhao,  Local  spectral  time-domain    method  for  electromagnetic  wave  propagation,      Optics  Letters,    28,    513-515  (2003). 

 

(93)  Z.  H.    Shao,    Z.  Shen,  Q.  He  and  G.W.  Wei,  A  generalized  higher-order  finite  difference  time  domain  method  and  its  application  in  guided-wave  problems,  IEEE  T.  Microwave  Theory  Tech.,  51,  856-861  (2003). 

 

(92)  Y.C.  Zhou,    Y.  Gu  and  G.W.  Wei,  Shock-capturing  with  natural  high  frequency  oscillations,    Int.  J.    Numer.  Methods  in  Fluid,    41,  1319-1338  (2003). 

 

(91)  Y.    Gu,  Y.C.  Zhou  and  G.W.  Wei,  Conjugate  filters  with  spectral-like  resolution  for  2D  incompressible  flows,  Computers  and  Fluids,  33,  777-794  (2003). 

 

(90)  S.  Guan,  Y.C.  Zhou,  G.W.  Wei  and  C.-H.  Lai,    Controlling  flow  turbulence,    Chaos,  13,  64-70  (2003). 

 

(89)  S.  Guan,  C.-H.    Lai  and  G.W.  Wei,  On  geometry  and    boundary    control    of    pattern    formation    and  competition,    Physica    D,  176,  19-43  (2003). 

 

(88)  Y.  Gu    and  G.W.  Wei,    Conjugated  filter  approach  for  shock  capturing,  Commun.    Numer.    Meth.  Engng.,  19,  99-110  (2003). 

 

(87)  Y.C.  Zhou,  B.  S.  V.    Patnaik,  D.C.  Wan  and  G.  W.  Wei,  DSC  solution  for  flow  in  a  staggered  double  lid  driven  cavity,  Int.  J.    Numer.    Methods  in    Engng.  ,57,  211-234  (2003). 

 

(86)  S.  Zhao  and  G.W.  Wei,    Jump  process  analysis  for  the  trend  estimation  of  time  series,    Comput.  Statist.  Data  Anal.,    42,    219-241  (2003). 

 

(85)  G.W.  Wei,  M.  Zhan,  and  C.-H.  Lai,  Tailoring    wavelets  for  chaos  control,  Phys.  Rev.  Lett.  89,  284103  (2002).  This  work  was  highlighted  in  Physical  Review  Letters  and  featured  in  Nature. 

 

(84)  G.  W.  Wei  and  Y.  Q.    Jia,    Synchronization    based    image  edge  detection,  Europhys.    Lett.  59,  814-819  (2002). 

 

(83)  Y.-C.    Lai,    Z.H.  Liu,  G.W.  Wei,  and  C.-H.  Lai,  Shadowing  of  statistical  averages  in  chaotic  systems,    Phys.  Rev.    Lett  .  89,  184101  (2002). 

 

(82)  M.  Zhan,  G.W.  Wei,  C.-H.  Lai,  Y.-C.  Lai  and  Z.H.  Liu,    Coherent    resonance  near  Hopf    bifurcation  from  chaos,    Phys.  Rev.  E  66,  036201  (2002). 

 

(81)  G.W.  Wei,  and    Y.  Gu,  Conjugated  filter  approach  for  solving  Burger's  equation,    J.  Comput.    Appl.  Math.,  149,  439-456  (2002). 

 

(80)  Y.    Xiang,  Y.B.  Zhao  and  G.W.  Wei,    Closed    form  solutions  for  vibration  of  multi-span  rectangular  plates,    Int.    J.    Mech.    Sci.  ,  44,  1195-1218  (2002). 

 

(79)  D.C.  Wan,  B.S.V.    Patnaik    and  G.W.  Wei,    Discrete  singular  convolution-finite  subdomain    method  for  the  solution  of  incompressible  viscous  flows,  J.  Comput.    Phys.  180,  229-255  (2002). 

 

(78)  Y.    Xiang    and  G.W.  Wei,    Exact  solutions  for  the  vibration  of  multi-span  rectangular  Mindlin  plates,  Journal  of  Vibration  and  Acoustics,  Trans.  ASME,  124,  545-551  (2002). 

 

(77)  G.W.  Wei,    Oscillation  reduction  by  anisotropic  diffusions,  Comput.  Phys.    Commun.  ,    144  ,  417-342  (2002). 

 

(76)  G.W.  Wei,  Y.B.  Zhao,  and  Y.    Xiang,  A  novel  approach  for  the  analysis  of  high  frequency  vibrations,    J.  Sound  and  Vibration  ,  257,  207-246  (2002). 

 

(75)  Y.B.  Zhao  and  G.W.  Wei,    DSC    analysis  rectangular  plates  with  nonuniform  boundary  conditions,  J.  Sound  and  Vibration,  255,  203-225  (2002). 

 

(74)  G.W.  Wei  and  S.  Zhao,    Synchronization  and  information  processing  by  an  on-off  coupling,  Phys.  Rev.  E,  65,  056210  (2002). 

 

(73)  Y.    Xiang,  Y.B.  Zhao  and  G.W.  Wei,    Discrete  singular  convolution  and  its  application  to  the  analysis  of  plates  with  internal  supports.  II  Complex  supports,  Int.  J.    Numer.  Methods  Engng.  ,  55,  947-971  (2002). 

 

(72)  G.W.  Wei,  Y.B.  Zhao  and  Y.    Xiang,    Discrete  singular  convolution  and  its    application  to  the  analysis  of  plates  with  internal  supports,    I  Theory  and  algorithm,      Int.  J.    Numer.  Methods  Engng.  ,  55,  913-946  (2002). 

 

(71)  B.F.    Feng  and  G.W.  Wei,    A  comparison  of  the  spectral  and  the  discrete  singular  convolution  schemes  for  the  KdV-type    equations,  J.    Comput.    Appl.  Math.  ,  145,  183-188  (2002). 

 

(70)  Z.J.  Hou  and  G.W.  Wei,    A  new  approach    for    edge  detection,  Pattern  Recognition,  35(7)  ,  1559-1570  (2002). 

 

(69)  B.  S.  V.  Patnaik  and  G.W.  Wei,  Controlling  wake  turbulence  [Phys.  Rev.  Lett.  88,  054502  (2002)],  Phys.  Rev.  Lett.  ,    88,  127901  (2002). 

 

(68)  Y.B.  Zhao,  G.W.  Wei,  and  Y.    Xiang,  Plate  vibration  under  irregular  internal  supports,      Int.  J.  Solids  and  Structures,  39,  1361-1383  (2002). 

 

(67)  S.  Guan,  C.-H.  Lai  and  G.W.  Wei,    A  wavelet  method  for  the  characterization  of  spatiotemporal  patterns,  Physica  D  ,  163  ,  49-79  (2002). 

 

(66)  D.C.  Wan,  Y.C.  Zhou  and  G.W.  Wei,  Numerical    solution    of    incompressible    flows  by  the  discrete  singular  convolution,  Int.  J.    Numer.  Methods  Fluid,  38  ,789-810  (2002). 

 

(65)  M.  Zhan,  G.W.  Wei  and  C.-H.  Lai,  Transition  from  intermittence  to  periodicity  in  lag  synchronization  in  coupled  Rossler  oscillators,  Phys.  Rev.  E  ,  65,  036202  (2002). 

 

(64)  S.  Y.  Yang,  Y.  C.  Zhou  and  G.W.  Wei,  Comparison  of  the  discrete  singular  convolution    algorithm    and  the  Fourier  pseudospectral    methods    for  solving    partial    differential    equations,  Comput.  Phys.  Commun.  ,  143  ,  113-135  (2002). 

 

(63)  B.  S.  V.  Patnaik,  and  G.W.  Wei,  Controlling  wake  turbulence,  Phys.  Rev.  Lett.  ,  88  ,  054502  (2002).  This  work  was  featured  in  Physical  Review  Focus  and  Wissenschat-online. 

 

(62)  Y.B.  Zhao,  G.W.  Wei,  and  Y.  Xiang,  Discrete  singular  convolution  for  the  prediction  of  high  frequency  vibration  of  plates,  Int.  J.  Solids  and  Struct.,  39,  65-88  (2002). 

 

(61)  G.W.  Wei,  H.  Wang,  D.J.  Kouri,  M.  Papadakis,  I.A.  Kakadiaris,  and  D.K.  Hoffman,    On  the  mathematical  properties  of  distributed  approximating  functionals,  J.  Math.  Chem.,  30  ,  83-107  (2001). 

 

(60)  Z.  Shi,  G.W.  Wei,  D.J.  Kouri,  D.K.  Hoffman,  Z.  Bao,    Lagrange  wavelets  for  signal  processing,  IEEE  T.  Image  Processing,  10  ,  1488-1508  (2001). 

 

(59)  D.C.  Wan,  B.S.V.    Patnaik  and  G.W.  Wei,  A  new  benchmark  quality  solution  for  the  buoyancy  driven  cavity  by  discrete  singular  convolution,  Numer.  Heat    Transfer  B  -  Fundamentals  ,  40  ,  199-228  (2001). 

 

(58)  G.W.  Wei,  Y.B.  Zhao  and  Y.  Xiang,  The  determination  of  the  natural  frequencies  of  rectangular  plates  with  mixed  boundary  conditions  by  discrete  singular    convolution,  Int.  J.  Mech.  Sci.  ,  43  ,  1731-1746  (2001). 

 

(57)  S.  Guan,  C.-H.  Lai  and  G.W.  Wei,    Fourier-Bessel  analysis  of  patterns  in  a  circular  domain,  Physica  D  ,  151  ,  83-98  (2001). 

 

(56)  G.W.  Wei,    Discrete  singular  convolution  for  beam  analysis,  Engineering    Structures  ,    23  ,  1045-1053  (2001). 

 

(55)  G.W.  Wei,    Vibration  analysis  by  discrete  singular  convolution,    J.  Sound    Vibration  ,  244  ,  535-553  (2001). 

 

(54)  G.W.  Wei,  Synchronization  of  single-side  locally  averaged  adaptive  coupling  and  its  application  to  shock  capturing,  Phys.  Rev.  Lett.  ,  86  ,  3542-3545      (2001). 

 

(53)  G.W.  Wei,  A  new  algorithm  for  solving  some  mechanical  problems,  Comput.  Methods  Appl.  Mech.  Engng.,  190,    2017-2030  (2001). 

 

(52)  D.C.  Wan  and  G.W.  Wei,  The  study  of  quasi  wavelets  based  numerical  method  applied  to  Burgers'  equations,  Appl.  Math.  Mech-Engl  ,  21  ,  1099-1110  (2000). 

 

(51)  D.C.  Wan  and  G.W.  Wei,  Numerical  solution  of  incompressible  Euler  and  Navier-Stokes  equations  by  efficient  discrete  singular  convolution  method,  Acta  Mechanica  Sinica,  16  ,  223-239  (2000). 

 

(50)  G.W.  Wei,    Wavelets  generated  by  using  discrete  singular  convolution  kernels,    J.  Phys.  A,  Mathematical  and  General,  33  ,  8577-8596  (2000). 

 

(49)  G.W.  Wei,    A  unified  approach  for  the  solution  of  the  Fokker-Planck  equation,  J.  Phys.  A,  Mathematical  and  General  ,  33  ,  4935-4953  (2000). 

 

(48)  G.W.  Wei,    Solving  quantum  eigenvalue  problems  by  discrete  singular  convolution,  J.  Phys.  B  ,  33  ,  343-352  (2000). 

 

(47)  G.W.  Wei,    Discrete  singular  convolution  for  the  sine-Gordon  equation,    Physica    D,    137  ,  247-259  (2000). 

 

(46)  D.  K.  Hoffman,  G.  W.  Wei,  and  D.  J.  Kouri,    A  variation  approach  to  the  Dirichlet--Gabor  wavelet-distributed  approximating  functional,  J.  Math.  Chem.,  25,  235-244  (1999). 

 

(45)  D.S.  Zhang,  G.W.  Wei,  D.J.Kouri,  David  K.  Hoffman,  Michael  Gorman,  Antonio  Palacios,  and  Gemunu  H.  Gunaratne,    Integrating  the  Kuramoto-Sivashinsky  equation  in  polar  coordinates:  Application  of  the  distributed  approximating  functional  approach,  Phys.  Rev.  E.,  60  ,  3353-3360  (1999). 

 

(44)    Zhuoer  Shi,  D.J.    Kouri,  G.W.  Wei,  and  David  K.  Hoffman,  Generalized  symmetric  interpolating  wavelets,  Comput.  Phys.    Commun.,    119,  194-218    (1999). 

 

(43)  D.J.    Kouri,  D.S.  Zhang,  G.W.  Wei,  and  D.K.  Hoffman,  Numerical  solutions  of  nonlinear  wave  equations  ,  Phys.  Rev.  ,  E  59  ,  1274-1277  (1999). 

 

(42)  G.W.  Wei,  Generalized    Perona-Malik    equation  for  Image  Restoration,  IEEE  Signal  Processing    Lett.,    6,  165-167  (1999). 

 

(41)  G.W.  Wei,    Discrete  singular  convolution  for  the  solution  of  the  Fokker-Planck  equations,    J.  Chem.  Phys.  ,  110  ,  8930-8942  (1999). 

 

(40)  G.W.  Wei,    Generalized  reaction-diffusion  equations,    Chem.  Phys.    Lett  .  ,    303,    531-536  (1999).

 

(39)  S.    Alavi,  G.W.  Wei  and  R.F.  Snider,    Chain  relations  of  reduced  distribution  functions  and  their  associated  correlation  functions,    J.  Chem.  Phys.,  108  ,  706-714  (1998). 

 

(38)  D.S.  Zhang,  G.W.  Wei,  D.J.  Kouri  and  D.K.  Hoffman,    Lagrange  distributed  approximating  functional  method  for  the  solution  of  the    Schrodinger  equation,  Chem.  Phys.    Lett.  ,    284  ,  56-62  (1998). 

 

(37)  D.K.  Hoffman,  G.W.  Wei,  D.S.  Zhang,  and  D.J.  Kouri,  Interpolating  distributed  approximating  functionals,  Phys.  Rev.  ,  E  57  ,  6152-6160  (1998). 

 

(36)  D.K.  Hoffman,  G.W.  Wei,  and  D.J.  Kouri,  Shannon-Gabor  wavelet  distributed  approximating  functional,  Chem.  Phys.  Lett.  ,  287  ,  119-124  (1998). 

 

(35)  G.W.  Wei,  D.S.  Zhang,  D.J.  Kouri  and  D.K.  Hoffman,  Distributed  approximating  functional  approach  to  Burgers'  equation  in  one  and  two  space  dimensions,    Comput.  Phys.  Commun.  ,  111  ,    87-92  (1998). 

 

(34)  G.W.  Wei,  S.    Althorpe,  D.J.  Kouri  and  D.K.  Hoffman,  Lagrange-distributed  approximating-functional  approach  to  wave-packet  propagation:  Application  to    the  time-independent  wave-packet  reactant-product  decoupling  method,  Phys.  Rev.  A  57  (5)  ,  3309-3316  (1998). 

 

(33)  G.W.  Wei,  D.J.  Kouri,  and  D.K.  Hoffman,  Wavelets  and  distributed  approximating  functionals,  Comput.  Phys.  Commun.  ,  112,  1-6  (1998). 

 

(32)  G.W.  Wei,  D.S.  Zhang,  D.J.  Kouri,  and  D.K.  Hoffman,    Wavelet-distributed  approximating  functional  method  for  solving  the  Navier-Stokes  equation,  Comput.  Phys.  Commun.  ,  115  ,  18-24  (1998). 

 

(31)  G.W.  Wei,  D.S.  Zhang,  D.J.  Kouri  and  D.K.  Hoffman,  A  robust  and  reliable  approach  to  nonlinear  dynamical  problems,  Comput.  Phys.  Commun.,  111,  93-109  (1998). 

 

(30)  G.W.  Wei,    Quasi  wavelets  and  quasi  interpolating  wavelets,    Chem.  Phys.    Lett.,    296  ,  215-222  (1998). 

 

(29)  G.W.  Wei,  S.  Althorpe,  D.J.  Kouri  and  D.K.  Hoffman,    An  application  of  distributed  approximating  functional-wavelets  to  reactive  scattering,  J.  Chem.  Phys.,  108  ,  7065-7069  (1998). 

 

(28)  G.W.  Wei,  D.S.  Zhang,  D.J.    Kouri  and  D.K.  Hoffman,  Lagrange  distributed  approximating  functionals,  Phys.  Rev.    Lett.  ,79  ,  775-779  (1997). 

 

(27)  G.W.  Wei,  S.  Alavi  and  R.F.  Snider,    Equal  reaction  rates  for  all  recombination  pathways,  J.  Chem.  Phys  ,  106  ,  1463-1466  (1997). 

 

(26)  D.S.  Zhang,  G.W.  Wei,  D.J.    Kouri  and  D.K.  Hoffman,  Distributed  approximating  functional  approach  to  the  Fokker-Planck  equation:  Eigenfunction  expansion,    J.  Chem.  Phys.  ,  106  ,  5216-5224  (1997). 

 

(25)  D.S.  Zhang,  G.W.  Wei,  D.J.  Kouri  and  D.K.  Hoffman,  Burgers'  equation  with  high  Reynolds  number,    Phys.  Fluids  ,  9  ,  1853-1855  (1997). 

 

(24)  D.S.  Zhang,  G.W.  Wei,  D.J.  Kouri  and  D.K.  Hoffman,  Numerical  method  for  the  nonlinear  Fokker-Planck  equation,  Phys.  Rev.  E  56  ,  1197-1206  (1997). 

 

(23)  G.W.  Wei,  D.S.  Zhang,  D.J.  Kouri  and  D.K.  Hoffman,  Distributed  approximating  functional  approach  to  the  Fokker-Planck  equation:  Time  propagation,  J.  Chem.  Phys.,  107  ,  3239-3246  (1997). 

 

(22)  J.G.  Muga,  G.W.  Wei  and  R.F.  Snider,    Short-time    behaviour  of  the  quantum  survival  probability,  Europhys.  Lett.,  35,  247-252  (1996). 

 

(21)  J.G.  Muga,  G.W.  Wei  and  R.F.  Snider,    Survival  probability  for  the  Yamaguchi  potential,  Ann.  Phys.  ,  252  ,  336-356  (1996). 

 

(20)  R.F.  Snider,  G.W.  Wei  and  J.G.  Muga,  Moderately  dense  gas  quantum  kinetic  theory:  Transport  coefficient  expressions,  J.  Chem.  Phys.  ,  105  ,  3066-3078  (1996). 

 

(19)  R.F.  Snider,  G.W.  Wei  and  J.G.  Muga,  Moderately  dense  gas  quantum  kinetic  theory:  Aspects  of  pair  correlations,  J.  Chem.  Phys.  ,  105  ,  3057-3065  (1996). 

 

(18)  G.W.  Wei  and  R.F.  Snider,    Discrete  basis  representation  of  Ursell  operators,  Phys.  Rev.  ,  E  54  ,  2414-2418,  (1996). 

 

(17)  G.W.  Wei  and  R.  F.  Snider,    Correlated  state  evaluation  of  the  second    virial  coefficient,  Phys.  Rev.  A  ,  52(4)  ,  2925-2936  (1995). 

 

(16)  G.  Wei  and  R.  F.  Snider,  A  pictorial  representation  for  multispin  evolutions,  Concepts  in    Magn.  Reson.  ,  7(2)  ,  153-163  (1995). 

 

(15)    R.  F.    Kiefl,  J.  W.  Schneider,  A.  McFarlane,  K.  Chow,  T.  L.  Duty,  T.  L.  Estle,  B.  Hitti,  R.  L.Lichti,  E.  J.    Ansaldo,  C.  Schwab,  P.  W.  Percival,  G.  Wei,  S.  Wlodek,  K.  Kojima,  W.  J.  Romanow,  J.  P.  McCauley,  Jr,  N.  Coustel,  J.  E.  Fischer,  and  A.  B.  Smith,  III,  Molecular  dynamics  of  the  Muonium-C60    radical  in  solid  C60,    Phys.  Rev.  Lett.  ,    68  ,  2708-2712  (1992). 

 

(14)  R.  F.  Kiefl,  J.  W.  Schneider,  A.  McFarlane,  K.  Chow,  T.  L.  Duty,  T.  L.  Estle,  B.  Hitti,  R.  L.  Lichti,  E.  J.  Ansaldo,  C.  Schwab,  P.  W.  Percival,  G.  Wei,  S.  Wlodek,  K.  Kojima,  W.  J.  Romanow,  J.  P.  McCauley,  Jr,  N.  Coustel,  J.  E.  Fischer,  and  A.  B.  Smith,  III,  Molecular  dynamics  of  the  (Mu+)-  C60      radical  in  solid  C60,      Phys.  Rev.  Lett.  ,  68,  1347-1350  (1992). 

 

(13)  F.L.  Jiang,  G.W.  Wei,  Z.Y.  Huang,  X.J.  Lei,    M.C.  Hong,  B.S.  Kang    and  H.Q.  Liu,  Syntheses  and  crystal  structures  of  2  thiolato-organophosphino  cobalt(II)  complexes,  (Et4N)[Co(SC6H5)3(PPh3)]  and  [Co(S-meta-    C6H4CH3)2(Ph2PCH2CH2P(Ph)CH2CH2PPh2)],    J.  Coord.  Chem.,    25,  183-191  (1992). 

 

(12)  G.W.  Wei,    Z.Y.  Huang,  X.J.  Lei,    R.  Cao,  F.L.  Jiang,  M.C.  Hong,    L.R.  Huang  and  H.Q.  Liu,  Structure  of  [Bis(2-diphenylphospinoethyl)phenylphospine-P,  P,  P]  carbonyl-(phenylthiolato)Cobalt(I),  [Co(Ph2PCH2CH2P(Ph)CH2CH2PPh2)(SPh)(CO)],  ActaCrystallogr.  C,    48,  2130-2132  (1992). 

 

(11)  G.  Wei,  M.  Hong,  Z.  Huang,  and  H.  Liu,  Synthesis  and  crystal  structure  of  a  platinum(II)  complex  with  mixed  diphosphine      and  thiolate  ligands,  Pt(dppm)(SPh)_2,    J.  Struct.  Chem.,    11(5),  334-338  (1992). 

 

(10)  M.C.  Hong,  Z.Y.  Huang,  X.J.  Lei,  G.W.  Wei,  B.S.  Kang  and  H.Q.  Liu,  Syntheses,  properties  and  X-ray  crystal  structures  of  hexa-nuclear  cobalt  chalcogen  clusters  Co6S8(PPh3)6  and  Co6Se8(PPh3)6.THF,  Polyhedron,  10,  927-934  (1991). 

 

(9)  F.L.  Jiang,  G.W.  Wei,  X.J.  Lei,  L.R.  Huang,  M.C.  Hong    and  H.Q.  Liu,  Synthesis,  characterization  and  polymorphic  crystal  structures  of  Bis(para-tolylthiolato)bis(tri-n-butylphosphine)-Nickel(II),    J.  Chem.  Res.  S,    9,  238-239  (1991). 

 

(8)  G.W.  Wei,  M.C.  Hong,  Z.Y.  Huang,  and  H.Q.  Liu,  Stereochemistry  of  mixed    thiolate  and  ditertiary  phosphine  cobalt  (II)  complexes  --  Crystal  structures  of  [Co(Ph2P(CH2)3-PPh2)(SPh)2]  and  [Co(Ph2PCH2CH2P(Ph)CH2CH2PPh2)(SPh)2],  J.  Chem.  Soc.  Dalton,    11,    3145-3148  (1991). 

 

(7)  G.W.  Wei,  H.Q.  Liu,  Z.Y.  Huang,  M.C.  Hong,  L.R.  Huang  and  B.S.  Kang,  Syntheses  and  stereochemistry  of  Dicobalt  (II)  complexes,  [Co2(dppm)(mu-SR)2(SR)2]  (dppm=Ph2PCH2PPh2  -  R=C6H5,  m-C6H4CH3,  p-C6H4CH3  and  p-C6H4-TC4H9)  and  [Co2(dppe)(mu-SPh)3(SPh)]  (dppe=Ph2PCH2CH2PPh2),  Polyhedron,  10,  553-560  (1991). 

 

(6)    M.  Hong,  Z.  Huang,  X.  Lei,  G.  Wei,  B.  Kang,  and  H.  Liu,  A  cobalt-selenium  cluster  with  triethylphophine:  Preparation  an  structure  of  Co6(v3-Se)8(PEt_3)_6.THF,    Chin.    J.    Chem.,  (English),    9(5),  421-428  (1991). 

 

(5)  G.W.  Wei  and  H.Q.  Liu,  Structure  of  [1,2-Bis(diphenylphosphino)Ethane]  -Di(phenylthio)Palladium(II),  Acta  Crystallogr.  C,    46,  2457-2458  (1990). 

 

(4)  H.Q.  Liu  R.  Cao,  X.J.  Liu  D.  Wu,  G.W.  Wei,  Z.Y.  Huang,  M.C.  Hong,  and  B.S.  Kang,  Syntheses  and  structural  characterizations  of  a  series  of  Mo(W)-Cu-S  compounds  of  bidentat  dialkyldithiocarbamate  ligands--  Crystal  structure  of  [NET4]2{Mo2Cu5S6O2(Me2NCS2)3],  J.  Chem.  Soc.  Dalton,    3,  1023-1026  (1990). 

 

(3)  M.C.  Hong,  Z.Y.  Huang,  X.J.  Lei,  G.W.  Wei,  B.S.  Kang  and  H.Q.  Liu,  A  new  cobalt  sulfur  cluster  with  triphenylphosphine  -  Preparation  and  structure  of  CO6S8(PPh3)6,  Inorg.  Chem.  Acta,  159,  1-2  (1989). 

 

(2)  H.  Liu,  R.  Cao,  X.  Lei,  G.  Wei,  and  B.  Kang,  NMR  study  of  some  molybdenum  (tungsten)-copper-sulfur  compounds,    Bull.    Magn.  Reson.,    11(3-4),  395    (1989). 

 

(1)  G.W.  Wei,  H.Q.  Liu,  Z.Y.  Huang,  L.R.  Huang  and  B.S.  Kang,  Synthesis  and  X-ray  structure  of  an  asymmetrical  dicobalt  (II)  complex  CO2(dppe)(mu-SPH)3SPh  (dppe=Ph2PCH2CH2PPh2),  J.  Chem  Soc.  Chem.  Commun.,  23,  1839-1840  (1989). 

   

   

PATENTS

1.      Donald K Kouri, David K Hoffman, Mark Arnold, Ioannis A Kakadiaris, Zhuoer Shi, DeSheng Zhang, Gemunu H Gunaratne, Haixiang Wang, Guowei W Wei,  Methods for performing DAF data filtering and padding – US Patent 7272265 (2007).

 

2.      Guowei Wei, Duc D Nguyen and Zixuan Cang, System and methods for machine learning for drug design and discovery - US Patent App. 16/372,239 (2019).

 

3.      GW Wei, DD Nguyen, Z Cang, Systems and methods for drug design and discovery comprising applications of machine learning with differential geometric modeling, US Patent App. 17/043,551 (2021).

 

4.      Guowei Wei, Jiahui Chen, Zixuan Cang and Weihua Geng, Machine learning based implicit solvent models for molecular simulations, Pending,  US Patent App. 17/637,440, (2022).