Big data, image, signal  and  surface 

(217) Kelin Xia and Guo-Wei Wei, A review of geometric, topological and graph theory apparatuses for the modeling and analysis of biomolecular data (2016).

 

(216) Kedi Wu and Guo-Wei Wei, Comparison of multi-task convolutional neural network (MT-CNN) and a few other methods for toxicity prediction (2017).  

 

(215) Bao Wang, Chengzhang Wang, Kedi Wu and Guo-Wei Wei, Feature functional theory - solvation  predictor (FFT-SP) for the blind prediction of solvation free energy, (2016).

 

(213) Z.  X. Cang, R. Q. Guo, Heedeok Hong and Guo-Wei Wei, Accurate prediction of membrane protein stability changes upon mutation, (2017).

 

(214) Z. X. Cang and Guo-Wei Wei, TopologyNet: Topology based deep convolutional neural networks for biomolecular property predictions, (2017).

 

(212) Z. X. Cang and Guo-Wei Wei, Topological fingerprints reveal protein-ligand binding mechanism, (2017).

 

(211) Z. X. Cang and Guo-Wei Wei, Element specific persistent homology for the analysis and prediction of protein folding stability upon mutation, (2017).

 

(210) Duc D Nguyen, Tian Xiao, Menglun Wang  and Guo-Wei Wei, Rigidity strengthening is a vital mechanism for protein-ligand binding,   (2017).

 

(209) Bao Wang, Zhixiong Zhao, Duc Nguyen and Guo-Wei Wei, Feature functional theory - binding predictor (FFT-BP) for the blind prediction of binding free energy, Theoretical Chemistry Account, accepted (2017).

 

(204) Beibei Liu, Bao Wang, Rundong Zhao, Yiying Tong and Guo-Wei Wei, ESES:  software for Eulerian solvent excluded surface, Journal of Computational Chemistry, 38, 446-466 (2017).

 

(199) Bao Wang, Zhixiong Zhao and Guo-Wei Wei, Automatic parametrization of non-polar implicit solvent models for the blind prediction of solvation free energies, Journal of Chemical Physics, 145, 124110 (2016).

 

(195) Bao Wang and   Guo-Wei Wei,  Object-oriented persistent homology,  Journal of Computational Physics, 305, 276-299 (2016).

 

(194) Zixuan Cang, Lin Mu, Kedi Wu, Kris Opron, Kelin Xia and Guo-Wei Wei, A topological approach to protein classification, Molecular based Mathematical Biology, 3, 140-162 (2015)   

 

(191) Kelin  Xia, Zhixiong Zhao   and    Guo-Wei Wei,  Multiresolution persistent homology for excessively large biomolecular datasets, Journal of Chemical Physics, 143, 134103 (2015).

 

(188) Kelin  Xia   and    Guo-Wei Wei,  Multidimensional persistence in  biomolecular data,   Journal of Computational Chemistry, 36, 1502-1520 (2015).

 

(187) Kelin  Xia, Zhixiong Zhao  and   Guo-Wei Wei,  Multiresolution topological simplification, Journal of Computational Biology, 22, 9, 1-5 (2015).

 

(185) Kelin  Xia   and    Guo-Wei    Wei,  Persistent topology for cryo-EM data analysis,    International  Journal  for  Numerical    Methods  in    Biomedical    Engineering,  31, e02719 (2015).

 

(182) Kelin  Xia, X.  Feng,  Yiying  Tong  and    Guo-Wei    Wei,  Persistent homology for the quantitative prediction of fullerene stability, Journal of Computational Chemistry, 36, 408-422 (2015).

 

(178) Kelin  Xia   and    Guo-Wei    Wei,  Persistent homology  analysis of protein structure, flexibility and folding,    International  Journal  for  Numerical    Methods  in    Biomedical    Engineering, 30, 814-844 (2014).

 

(176) Kelin Xia and Guo-Wei Wei, Molecular nonlinear dynamics and protein thermal uncertainty quantification, Chaos, 24, 013103 (2014).

 

(173)  Kelin Xia, and Guo-Wei Wei, A stochastic model for protein flexibility analysis, Physical Review E, 88, 062709 (2013).

 

(172) X.  Feng,  Kelin  Xia, Zhan Chen, Yiying  Tong  and    Guo-Wei    Wei, Multiscale  geometric modeling of macromolecules II: Lagrangian representation, Journal of Computational Chemistry,  34, 2100-2120  (2013).

 

(163)  Langhua    Hu,  Duan  Chen  and  Guo-Wei  Wei,    High-order  fractional  partial  differential equations for molecular surface  construction, Molecular  Based  Mathematical  Biology,  1-25  (2012).

 

(162) X.  Feng,  Kelin  Xia,  Yiying  Tong  and    Guo-Wei    Wei,  Geometric  modeling  of  organelles,  subcellular  structures   and  multiprotein  complexes,  International  Journal  for  Numerical    Methods  in    Biomedical    Engineering, 28, 1198-1223 (2012).

 

(157)    Yang  Wang,    Guo-Wei    Wei    and    Siyang    Yang,    Selective    extraction  of  entangled  textures  via    adaptive  PDE  transform,    Int.      J.    Biomed      Imaging,    Volume 2012 (2012), Article ID 958142 (2012).

 

(153)    Yang  Wang,    Guo-Wei    Wei    and    Siyang    Yang,    Model    decomposing  evolution    equations,  Journal  of  Scientific    Computing,    50, 495-518 (2012).

 

(152)      Yang    Wang,    Guo-Wei    Wei    and    Siyang  Yang,  Empirical  model  decomposition    using    local  spectral    evolution    kernels,    Journal  of  Scientific  Computing,   50, 629-664   (2012).

 

(147)  Yang  Wang,    Guo-Wei    Wei    and    Siyang    Yang,  Partial  differential  equation  transform  ---  variational  formulation  and  Fourier  analysis  ,    International  Journal  for      Numerical    Methods  in  Biomedical    Engineering,   27,   1996-2020,  (2011).

 

(142) G. W.  Wei, Lalita Udpa, Yang Wang and Shan Zhao, Editorial: Mathematical  methods  for  images  and surfaces,   International   Journal of  Biomedical  Imaging,  Volume 2010, Article ID 918467, 3 pages (2010).

 

(139) Changjun Chen,  Rishu Saxena, and Guo-Wei Wei,  Differential  geometry  based  multiscale  model  for  virus capsid  dynamics,  Int.   J.  Biomed  Imaging,  Volume 2010, Article ID 308627, 9 pages (2010).

 

(136) G.W. Wei and G. Wang,  Editorial:  Special issue on recent advances in  computational techniques for biomedical  imaging,  Commun. Numer. Methods Engng, 25, 581-582 (2009)

 

(135) P. Bates, Z. Chen, Y.H. Sun, G.W. Wei and S. Zhao,  Geometric and potential  driving   formation and evolution  of  biomolecular surfaces, J. Math. Biol. 59, 193-231 (2009)

 

(133) Duan Chen, G.W. Wei, X. Cong and Ge Wang,  Computational methods for optical  molecular  imaging, Commun. Numer. Methods Engng,  25, 1137-1161(2008).

 

(124) G.W. Wei, Editoral: Recent advances in mathematical methods for the analysis of biomedical image, International Journal of  Biomedical  Imaging, vol. 2006, 70578, 1, (2006).

 

(121)  Ge Wang, Haiou Shen Wenxiang Cong, Shan Zhao and G.W. Wei, Temperature modulated bioluminescence tomography, Optics Express,  14 (17)  7852-7871 (2006).

 

(119) Y.H. Sun, P.R. Wu, G.W. Wei and G. Wang, Evolution operator based single-step method for image processing, Int. J. Biomed. Imaging, 83847, 1-27 (2006).

 

(86) S. Zhao and G.W. Wei,  Jump process analysis for the trend estimation of time series,  Comput. Statist. Data Anal.,  42,  219-241 (2003).

 

(84) G. W. Wei and Y. Q.  Jia,  Synchronization based image edge detection, Europhys.  Lett. 59, 814-819 (2002).

 

(77) G.W. Wei,  Oscillation reduction by anisotropic diffusions, Comput. Phys.  Commun. ,  144 , 417-342 (2002). 

 

(70) Z.J. Hou and G.W. Wei, A new approach for edge detection, Pattern Recognition, 35(7) , 1559-1570 (2002). This article was the most requested paper in Pattern Recognition.

 

(67) S. Guan, C.-H. Lai and G.W. Wei,  A wavelet method for the characterization of spatiotemporal patterns, Physica D , 163 , 49-79 (2002).

 

(60) Z. Shi, G.W. Wei, D.J. Kouri, D.K. Hoffman, Z. Bao,  Lagrange wavelets for signal processing, IEEE T. Image Processing, 10 , 1488-1508 (2001).

 

(50) G.W. Wei,  Wavelets generated by using discrete singular convolution kernels,  J. Phys. A, Mathematical and General, 33 , 8577-8596 (2000).

 

(44)  Zhuoer Shi, D.J.  Kouri, G.W. Wei, and David K. Hoffman, Generalized symmetric interpolating wavelets, Comput. Phys.  Commun. ,  119, 194-218 (1999).

 

(42) G.W. Wei, Generalized  Perona-Malik  equation for Image Restoration, IEEE Signal Processing  Lett. ,  6 , 165-167 (1999).